Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0647 ATGTCTCTGGGAGAACCGAACCGCAACCCGCCGCCAGTGGCTGCAGAACGCAATAATACCCCCCCGGCATTGATAGCCTTCACCCTGGGCGTCCTTGTAATCTGCTTTGCGGCATTCAGCATTGTCTATTTATGCAAATATTGTTTTTCAGTGCTTATCCACAATTGGACCTTTCAACGCACTGCCTCAGGTTCCCTCATTCGTCTTTCACCCAACAGGTCTCCCCCTAGAGGTCTTGACCCTTCCTTGCTCCAAGTCTTCCCTACTTTCCTTTTTGCCTCTGTCAAGGACCTTCGCATGGAGAAGAATAGTCTTGAATGTGCCATTTGCTTGTTTGAATTTGAGGATGATAGTATTCTTCGCCTCTTGACCCTCTGCTGCCATGTCTTCCACCAAGAATGCATTGACCTTTGGCTTAGTTCTCACAAGACATGCCCCGTTTGTCGAAGAGACCTTGATTCGCCAACCGATGAAATGCGAAAAAGTGGGGACATTATTGATCATCTTGTAGAAGATAGTATTGTGTCATCAACAAGCGATGAGTTACACATTGATGTAAGAGAAGGGGAAAACGATAGGGGTAGTGCAAGTGTTGGAGATCAAAGATACAAGCACAAACATGAACATAAACATGAATGTCAATGTGATTATGACCATCCTATTTTTATGAGCATCAGGGTGCAGCAACAAGAACAGCAAATGTTTGCAAGGTCACACTCAACGGGGCACTCTATAGTTTTGATTAGAGGTGGGGGAGTTGAAGGGAAAGATGATGATAAATACATGTTGAGATTACCGGAACATGTTACAAGAGGTAGGTGTAATTGTACAATGAGCTCTGTAAGTTACAAGGACATGGCGAGGCTTGTTGCACCTTTGACGTAA 885 0.4475 MSLGEPNRNPPPVAAERNNTPPALIAFTLGVLVICFAAFSIVYLCKYCFSVLIHNWTFQRTASGSLIRLSPNRSPPRGLDPSLLQVFPTFLFASVKDLRMEKNSLECAICLFEFEDDSILRLLTLCCHVFHQECIDLWLSSHKTCPVCRRDLDSPTDEMRKSGDIIDHLVEDSIVSSTSDELHIDVREGENDRGSASVGDQRYKHKHEHKHECQCDYDHPIFMSIRVQQQEQQMFARSHSTGHSIVLIRGGGVEGKDDDKYMLRLPEHVTRGRCNCTMSSVSYKDMARLVAPLT* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0647 294 Pfam Ring finger domain 106 149 IPR001841 -
Apr3g0647 294 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Apr3g0647 294 PANTHER RING FINGER DOMAIN-CONTAINING 7 272 - -
Apr3g0647 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 155 IPR013083 -
Apr3g0647 294 SMART ring_2 107 148 IPR001841 -
Apr3g0647 294 CDD RING-H2_EL5_like 106 149 - -
Apr3g0647 294 SUPERFAMILY RING/U-box 101 156 - -
Apr3g0647 294 PANTHER RING-H2 FINGER PROTEIN ATL29 7 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0647 Apr-Chr3 16448689 16449573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0647 22 271 Rapid Response to Elicitors AT2G35000 33.333 6.20e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0647 - - gmx:100815505 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1756 7 24859865 24861397 Apr3g0647 3 16448689 16449573 PCT