Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0646 ATGGATTACGCTCGGGACGGGAACGTCGTGCAAATAATCACCGGCGGCGGCGGCAGCGGAGAAAGCTGGTCCGGTGACCAAGCCGATTGGGCGACGGAGGACGAGTACCGGTTCTGGAACAACAACGGCGACGCCGAAACGACGCCGTCGAACTCAAATTACGAGTCTCGGCGGTCGGGGAGCGAGCCGCCGGGCAAAAAGTCGAGGAATTCGCAGGATGGCGGCGGCTCGAGCCGGTCAAAGGCGATCGGAAAGATGTTCTTCAAGACGAAGCTGTGCTGCAAGTTCCGGGCAGGGACCTGCCCGTACATCACGAATTGCAATTTTGCCCACAGCATAGAGGAGCTCCGGCGCCCGCCGCCGAACTGGCAGGAGATCGTGGCGGCGCACGAGGAGGAGAAAATGGTGATGACTGAGCCGAGGGAAGAGTTTCAGATTCCCACTGTGGGATCCTCTAGCTTCGCTGGGGACATGATGCAGAGGTCCTATAAGGGGCGTCATTGTAAGAAGTTTTACACTGAGGAAGGGTGTCCCTATGGGGACAGTTGTACTTTTCTTCATGATGAGCAATCCAAGAATCGTGAGAGTGTTGCTATTAGTTTAGGTCCTGGTGGTTATGGAGGTGGTGGTGGTGGTGGTGGTGTTGGTGGCGGCGGCGGGAGTGGGGGTGGTGGTGGAGGTGGCGGTGGTAGTGGGGCTGCTTCTGGTGGTTCTGCTGGGAATGGGCCTAATTCTAAGCCCTCTAATTGGAAAACCAGGATTTGTAATAAGTGGGAGATGACAGGGTATTGTCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCTACAGAGTTGCACAGATATGGAGGTGGGCTTATGGAGGGAGAAAATAGAGATGCTGCTTCTGCTGTTGCACCTGACACAAATAAGGGAGTGCCTTCAAAAGCTTGTCCTGATAATGTGGTTGCTTCAGTTACACCTGTTGCACATTCTGATGTTTATCATATTGGAGTCGTCCCTTCACAAAGGCCTTCTATTGTGATTCAGAGGCCAGGACAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGCAGGATATATGGTGATTGGATCGATGACATCGAATAG 1116 0.5323 MDYARDGNVVQIITGGGGSGESWSGDQADWATEDEYRFWNNNGDAETTPSNSNYESRRSGSEPPGKKSRNSQDGGGSSRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKMVMTEPREEFQIPTVGSSSFAGDMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGVGGGGGSGGGGGGGGGSGAASGGSAGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGENRDAASAVAPDTNKGVPSKACPDNVVASVTPVAHSDVYHIGVVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0646 371 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Apr3g0646 371 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 275 IPR000571 GO:0046872
Apr3g0646 371 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 25 204 - -
Apr3g0646 371 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 240 368 - -
Apr3g0646 371 PANTHER CCCH ZINC FINGER/TIS11-RELATED 240 368 IPR045877 GO:0003729
Apr3g0646 371 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 204 IPR045877 GO:0003729
Apr3g0646 371 Gene3D - 155 201 - -
Apr3g0646 371 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Apr3g0646 371 SMART c3hfinal6 249 276 IPR000571 GO:0046872
Apr3g0646 371 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Apr3g0646 371 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Apr3g0646 371 MobiDBLite consensus disorder prediction 41 78 - -
Apr3g0646 371 Gene3D - 243 281 - -
Apr3g0646 371 Gene3D - 82 118 - -
Apr3g0646 371 SUPERFAMILY CCCH zinc finger 247 280 IPR036855 GO:0046872
Apr3g0646 371 Pfam CCCH-type zinc finger 166 188 IPR041367 -
Apr3g0646 371 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Apr3g0646 371 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Apr3g0646 371 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
Apr3g0646 371 MobiDBLite consensus disorder prediction 34 80 - -
Apr3g0646 371 MobiDBLite consensus disorder prediction 222 249 - -
Apr3g0646 371 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0646 Apr-Chr3 16438526 16442395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0646 251 279 C3H Transcription Factor Family AT1G68200 62.069 4.20e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr3g0646 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0646 - - gmx:100788208 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0646 3 16438526 16442395 Apr3g0646 3 16438526 16442395 ECH