Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0641 ATGGGTAGGTCACCATGCTGTGAAGACAGTGGTGTAAAGAAAGGGCCATGGACACCAGAAGAAGATGAGAAACTAATGGATTATATTAAAAAACATGGCCGTGGAACGTGGAGAACACTTCCGAAGCATGCAGGTTTAAACAGGTGCGGGAAAAGCTGCAGGCTAAGGTGGGAAAACTACCTAAGGCCGGATATTAAGAGAGGGAAATTCTCTGAAGAAGAGGAGCGATTGATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGGCAAAGATTGCTTCCCATCTTCGAGGGAGAACTGATAACGAGATCAAGAATTATTGGAACACCAACATAAGAAAGAAGCTTCTCCAGATGGGTATTGATCCAGAAACTCACAAACCAAAAACTACCTTCAATCACCTTATGAGTCTTTCCCAGTTTCTTTCCCAGTTGCTTTGCATGTCAAATTTTGGCTTGGGCTCTTCAATGAGTCCTTTGAACAGTCCTCTTAGCTTGCATGAAGATATCACTCAATTAGCCAAACTACAACTTCTACACAATATGTTACAACTTATGAAAAACACTTCATTGATTAACATGGGTATCCCTTACCTTTTGCGCAATCAAAATCTAAATCCACTTCCTACATTAATCAAAGGGACAAGCATTGACCAAACTAAAGAGCCAATCTTGATAGGTCAAGAATATGCAAACCCTACTGGTAACAACCCCGGTCTTTTATTCTCTCAAGCACATGGTGAACCTAATCTGGGGGTTCTTGGTTACAACAAAAGCAGCATCAACTTACAAGAAAATCAAGCAGAAAACTTGCTTCCTGCATTGGTTGCATCCTGTCCTAGGACAATTAACTTCAATCAAATTGATAGGAACTTCAACACAGCACAGATGTCCTCCTCAACCTTTGAGGCTTGGGAGAAGTTCCTTATTGATGATGATGATGGAACAAGCGGTTCCTACTGGAAATAG 969 0.4118 MGRSPCCEDSGVKKGPWTPEEDEKLMDYIKKHGRGTWRTLPKHAGLNRCGKSCRLRWENYLRPDIKRGKFSEEEERLIINLHSVLGNKWAKIASHLRGRTDNEIKNYWNTNIRKKLLQMGIDPETHKPKTTFNHLMSLSQFLSQLLCMSNFGLGSSMSPLNSPLSLHEDITQLAKLQLLHNMLQLMKNTSLINMGIPYLLRNQNLNPLPTLIKGTSIDQTKEPILIGQEYANPTGNNPGLLFSQAHGEPNLGVLGYNKSSINLQENQAENLLPALVASCPRTINFNQIDRNFNTAQMSSSTFEAWEKFLIDDDDGTSGSYWK* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0641 322 CDD SANT 69 112 IPR001005 -
Apr3g0641 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr3g0641 322 SMART sant 13 63 IPR001005 -
Apr3g0641 322 SMART sant 66 114 IPR001005 -
Apr3g0641 322 CDD SANT 16 61 IPR001005 -
Apr3g0641 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 322 - -
Apr3g0641 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr3g0641 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Apr3g0641 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Apr3g0641 322 Gene3D - 68 135 - -
Apr3g0641 322 Gene3D - 13 66 - -
Apr3g0641 322 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Apr3g0641 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr3g0641 322 PANTHER MYB TRANSCRIPTION FACTOR 1 322 - -
Apr3g0641 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0641 Apr-Chr3 16196511 16197613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0641 1 322 MYB Transcription Factor Family AT5G16770 45.075 9.02e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g0641 Myb_DNA-binding 6.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0641 K09422 - gmx:100803906 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0641 3 16196511 16197613 Apr3g0641 3 16196511 16197613 ECH
Apr7g1762 7 24911349 24913313 Apr3g0641 3 16196511 16197613 PCT