Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0632 ATGTCAGTCCTTCTCGCAATCATCAATCCATCGCCAGCTGCTAGTGATATTAATGTCAGTCCAATATTCTGCTTAGACTGTGCAGTGCAAGCAAATACAAAAATTTTACCTATGGTTCTTCAGAACGATATTGATTTGCTGAATCCCCCTGCGGAGTTGGAGAAGAGAAAGCACAAACTCAAGCGTCTTGTTCAGTCCCCAAATTCCTTCTTCATGGATGTTAAGTGCCAGGGTTGTTTCAACATAACCACTGTATTTAGCCACTCTCAGACAGTTGTGGTATGCGGTAATTGCCAGACAGTGTTGTGCCAACCGACTGGTGGACGGGCAAGGTTAACCGAAGGTTGCTCCTTTAGGAAGAAAGGAGACTGA 372 0.4462 MSVLLAIINPSPAASDINVSPIFCLDCAVQANTKILPMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0632 123 PANTHER 40S RIBOSOMAL PROTEIN S27 35 122 IPR000592 GO:0003735|GO:0005840|GO:0006412
Apr3g0632 123 Hamap 30S ribosomal protein S27e [rps27e]. 61 121 IPR000592 GO:0003735|GO:0005840|GO:0006412
Apr3g0632 123 ProSitePatterns Ribosomal protein S27e signature. 75 107 IPR000592 GO:0003735|GO:0005840|GO:0006412
Apr3g0632 123 Pfam Ribosomal protein S27 67 121 IPR000592 GO:0003735|GO:0005840|GO:0006412
Apr3g0632 123 Gene3D - 42 122 IPR023407 -
Apr3g0632 123 SUPERFAMILY Zn-binding ribosomal proteins 67 121 IPR011332 GO:0006412
Apr3g0632 123 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 35 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0632 Apr-Chr3 15904219 15905216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0632 38 123 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.349 9.46e-60 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0632 K02978 - minc:123230388 177.563