Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0629 ATGAACCACGAAGAGAAAGTGACCATGGACATGGTTCCACCATCTGATCACCTCTGCTACGTTCGTTGCAATTTCTGTAACACTGTTCTTGCGGTTGGCATCCCGTGCAAGAGACTGCTAGACGCAGTGACAGTGAAGTGCGGTCATTGCAGCAACCTCTCCTTTCTGAGGACCAGGCCTCAACATAATCAAAATCAATGCATTGATCACTCCCTAAGTCTTCAGGGGTTTTACTGTGATTTCAAAAAGGGCCTAGCATCTTCTTCATCTTCCTCATCAACTAAATCTCGAGAGCCGGTGTCCCCGAAAGCTGCACCATTTGTTGTGAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCTTACAACCGTTTCATGAAAGAAGAGATACAGCGCATCAAAGCAGCCAACCCCGAAATTCCACATCGAGAAGCTTTTAGCGCAGCAGCAAAAAATTGGGCTAGGTACATTCCGAATTCGCCAACCAATTCAGTTTCTGCGATTAAAAATGATGAGAAATACCGGAACGGGTTGCTCCCGAACTGGCACAGTTCCTCTGGACCTGTTGAGTGTGCTGTAAAAGGCCAGATGGATACTGTTTCTCATTACTGCATGAGCATGAGCTGGGCTGGGCTGCATGGGCTGCATTTGCTATTTCTTGCGGAGTTACTAAGATTATTCTACTTTGATATGTTGTTTCTTTTTATCAGGCAGGTGAGGCTTCAGCTTCCAAGGCGGACCGGAGTAGCTAAAGGAGAAGCGGAGGATTAG 771 0.4708 MNHEEKVTMDMVPPSDHLCYVRCNFCNTVLAVGIPCKRLLDAVTVKCGHCSNLSFLRTRPQHNQNQCIDHSLSLQGFYCDFKKGLASSSSSSSTKSREPVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSPTNSVSAIKNDEKYRNGLLPNWHSSSGPVECAVKGQMDTVSHYCMSMSWAGLHGLHLLFLAELLRLFYFDMLFLFIRQVRLQLPRRTGVAKGEAED* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0629 256 Gene3D High mobility group box domain 108 183 IPR036910 -
Apr3g0629 256 PANTHER PROTEIN YABBY 6-RELATED 6 167 IPR006780 GO:0007275
Apr3g0629 256 SUPERFAMILY HMG-box 100 154 IPR036910 -
Apr3g0629 256 CDD HMGB-UBF_HMG-box 117 153 - -
Apr3g0629 256 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Apr3g0629 256 PANTHER PROTEIN CRABS CLAW 6 167 - -
Apr3g0629 256 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0629 Apr-Chr3 15632609 15637723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0629 1 170 C2C2-YABBY Transcription Factor Family AT1G69180 63.218 1.40e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Apr3g0629 YABBY 3.7e-54 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0629 K25796 - gmx:100819079 293.123