Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0620 ATGGGAAGGGGTAGGGTTCAGCTTAAGAGGATAGAGAACAAGATCAATCGCCAGGTTACTTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGCGATGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCTACTGATTCTTGCATGGAGAAGATACTGGAACGCTATGAAAGGTACGCCTATGCAGAGAGGCAGCTAGTTGCAAATGATTCTGAGTCACAGGGAAATTGGACCATTGAGTATACTAGACTCAAGGCGAAGATTGACCTTCTGCAGAGAAACCATAGACACTACATGGGAGAAGACTTAGGTTCAATGAACCTTAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAACAAATTCGTACACGCAGAAACCAACTCATGTACGAGTCCATTTCAGAGCTTCAGAAGAAGGAGAAACTGATACAGGAGCAGAACAACATGCTTGCAAAGAAGATCAAGGAAAAAGAGAAGGTTGCTGCGCAGCAGGCACAATGGGAGCATCCAAACCATGGAGTTAATGCATCCTTCTTACTAGCACAGCCACTTTTGAACATGGGTGGTAATTACCGTGAGGAAGCTCCAGAAATAGGAAGGAATGAGCTTGACTTGACTCTGGAACCATTGTATTCCTGCCACCTTGGATGCTTTTGA 711 0.4501 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMNLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKLIQEQNNMLAKKIKEKEKVAAQQAQWEHPNHGVNASFLLAQPLLNMGGNYREEAPEIGRNELDLTLEPLYSCHLGCF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0620 236 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Apr3g0620 236 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g0620 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Apr3g0620 236 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Apr3g0620 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr3g0620 236 Coils Coil 151 181 - -
Apr3g0620 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr3g0620 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr3g0620 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr3g0620 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr3g0620 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g0620 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr3g0620 236 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 213 - -
Apr3g0620 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr3g0620 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Apr3g0620 236 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0620 Apr-Chr3 14933978 14938633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0620 1 236 MADS-box Gene Family AT1G26310 63.780 1.37e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr3g0620 K-box 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0620 K09264 - gmx:100810129 450.284