Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0568 ATGATAAAGGGTAAAGTGGAAAATAGGATATTTAATAACGTTAACATCTTTAGCTTGAGGAGCAAGGTTGCTGCTACATGGGCAATTACTCGGTTTTCGAAGTTCCACATCCGAACCACAGGCTCGGGTTCGCTTTGGTCAACCATAGGCCCATCCAAACCAGAGGCTCGTTCCTGGTTCCGTGGAAAATACTTTGTACAAAGCACAGTTGGACTACAAGGCTTTGGTATGGCTGGCATTCTTGCATTGTGGGAAGGGGACAGTTTGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAACAATACTCTATCTTCAACTGATCAAATCAAGGATTGTGGGGCATATCGTGAATGTCCAAACTGTTATTATCATATTGACAACAGTGATATTTCTACTGAGTGGCCTGGCTTTCCTCTGGGTGTGAAGTTTGATCCTTCTGATGTAGAACTTTTAGAACATTTAGCGGCAAAGTGTGGCGTTGGGAACACACAGCAACACGTGTTTATCAATGAATTTATCACAACACTGGAAGGAGACCAAGGTATTTGCTACTTACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTTATGTTCACTTCTTCCACAGAACGATCAATGCGTATGCTACTGGTCAACGGAAGCGTCAAAAGATTGATCATCATGGTTTGACTGAAGAGCATGTGCGCTGGCAAAAGACTGGCAAGACCAAAGCTGTAATAGAAGATGGAGTACAGAAGGGCTTTAAGAAGATCATGGTTCTTTATACAAGAGCTAAGCATGGGTCCAAGCGCTGTAAATCTAACTGGGTAAGGCATCAATACCATCTAGGAACCAAAGAAGATGAGAAGGAAGGAGAATATGTGGTTTCAAAAATTTTTTATCAACAGCAAAAGCAGACTGAGAAAAGTGAAGAGAATCCAATGGCTGAAGATCCTGACAATATAACATTGCGAACAAGCCCAAAGACTCCTAAATCAAATCCCCCCAGTCTGCATCATGCAGGAAAATGTGTTGATTGTGATGATATTGTTAATGATACTGTGCCTTTGTCTTTTGTCCAGGATACCAAGACTATCCCTGGAGAATCACATGCCCCATTGTCTAATATTCAAGACCAAGACAACACAGGCAACGCTGCATGGTTGGCTGGTGAATCACAGGCAGTGGAAAGCTCTGAATATGCTGATTTGGATGACATATTATTGTGCAAGGAGATATTAGATTCGTCTGCTCTATTCAATGATTTTGGAACGGACTCCACCAATGTTGATGACTTTGCTTATTATGATAATAAAATGGCCAGAAATGATAATGTATCATGTGGAGTTTCTGTTCTGGATACACTTGAATTGGATACTCCTCCAGATTTTGATCTTTCTAATTTGGATTTTTGTTCTCAAGACAGTATCCTTGGGTGGATGGACATGTTATGA 1452 0.4105 MIKGKVENRIFNNVNIFSLRSKVAATWAITRFSKFHIRTTGSGSLWSTIGPSKPEARSWFRGKYFVQSTVGLQGFGMAGILALWEGDSLSWLIDIGGFAKKVKNNTLSSTDQIKDCGAYRECPNCYYHIDNSDISTEWPGFPLGVKFDPSDVELLEHLAAKCGVGNTQQHVFINEFITTLEGDQGICYLHPENLPGAKKDGSYVHFFHRTINAYATGQRKRQKIDHHGLTEEHVRWQKTGKTKAVIEDGVQKGFKKIMVLYTRAKHGSKRCKSNWVRHQYHLGTKEDEKEGEYVVSKIFYQQQKQTEKSEENPMAEDPDNITLRTSPKTPKSNPPSLHHAGKCVDCDDIVNDTVPLSFVQDTKTIPGESHAPLSNIQDQDNTGNAAWLAGESQAVESSEYADLDDILLCKEILDSSALFNDFGTDSTNVDDFAYYDNKMARNDNVSCGVSVLDTLELDTPPDFDLSNLDFCSQDSILGWMDML* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0568 483 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 90 481 - -
Apr3g0568 483 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 90 481 IPR044799 GO:0003700
Apr3g0568 483 Pfam No apical meristem (NAM) protein 142 282 IPR003441 GO:0003677|GO:0006355
Apr3g0568 483 MobiDBLite consensus disorder prediction 304 337 - -
Apr3g0568 483 SUPERFAMILY NAC domain 126 301 IPR036093 GO:0003677|GO:0006355
Apr3g0568 483 Gene3D NAC domain 150 306 IPR036093 GO:0003677|GO:0006355
Apr3g0568 483 ProSiteProfiles NAC domain profile. 141 301 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0568 Apr-Chr3 12463057 12467611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0568 119 305 NAC Transcription Factor Family AT4G28500 50.265 1.53e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr3g0568 NAM 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0568 - - aprc:113859476 1001.5