Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0567 ATGGCCAAAGGTGAAACCAGCACCAACGTAGTCCCTTTTTACAAACTTTTCTCTTTTGCAGATTCTTTAGATCGTGCTTTGATGTTTGTGGGCACAATTGGCGCCATTGCAAATGGACTTACCACTCCCTTAATGACTGTTGTTTTTGGAAATTTAATTGATGCATTTGGGGGACACACAAACCCCGAAGAAGTGGTTCATGACGTCTCTAAGGTGGCAGTTAAATTTGTATACTTGGGTGTGGGATCCTTTATAGGATCATATATTCAGGTGTCTTGCTGGATAGTGAGTGGGGAGAGACAGGCAGCAAGAATTAGAGGTTTATACCTTAAAGCAATATTGAGACAAGATGTGAGCTTCTTTGACATGGAAACTAATACTGGCGAGGCCGTTGGAAGGATGTCAAGCGACACTATTCTTATTCGAGATGCCATGGGCGAGAAGGTAGGACAGTTCATACAGTTAGTGGCATCTTTCATTGGAGGTTTTGTGATAGCATTCATAAAGGGGTGGCTTCTCACTCTTGTCTTGCTATCTTCTATTCCACCTGTTGTCTTTGCAAGTGCTTTGATGAGTATTGTAATTGCAAAAGTGACATCCAATGGACAAGTTGCATACTCTGAAGCCGCCAGTGTAGTAGAGCAGACAATTGGTTCTATACGAACGGTTGCATCATTCACCGGAGAGATGCAAGCTCTAGCTCACTATAATCAGTCTTTAATAAAAGCATACAGGAGTGGTGTGCAAGGGGGAATTGCTTCTGGTTTGGGATTTGGTTCAGTTTTACTTATTGTTTTCTGCACTTATGGTTTGGCTATATGGTTTGGTGTGAAATTGATACTAGAGAAAGGATATACAGGAGGCAACATTGTCACCATAATTTTTGCAATAATGACGGGATCCCTTTCTCTTGGGCAGGCATCTCCAAGCCTAAGTGCTTTTGCTGCAGGACAAGCTGCAGGCTTTAAGATGTTTGCAACGATTAATAGGAAACCAGATATTGATGCTTATGACACTACAGGTCAAGAACTTGTTGATATTGTTGGAGATATAGAACTGAGAGATATTTGCTTTAGTTATCCTGCAAGGCCAGATGAGCCTATATTTAATGGATTCTCTCTTTCAATACCAAAGGGAACAACTGCAGCTTTGGTAGGGAAAAGTGGGAGTGGGAAATCAACAATTATTAGCTTGATAGAGAGATTCTATGACCCACAAGCTGGGCAAGTTCTCATTGATGGAATCAATATCAAAGCCTTTAAACTTAAATGGATCAGACAGAAAATAGGCCTCGTCAGCCAGGAGCCAGTTCTGTTAACTTGTAGCATTAAAGAAAATATTGCCTATGGTAACGATGGTGCATCAGACGATGAAATCAAATATGCAGCACATCTTGCCAATGCTTCTAAGTTCATAGATAAACTTCCCCTGGGGCTGGATACGATGATAGGTCAGCATGGAACACAGCTCTCTGGTGGTCAAAAACAAAGAGTTGCCATAGCAAGAGCAATTTTGAAAGACCCAAGAATTCTACTTCTTGATGAAGCTACAAGTGCCCTTGATTCGGAATCTGAGAAAATAGTACAGGAGGCACTGGATAAAATCATGACAAACTGCACTACTGTTATTGTAGCCCACCGCTTGAGTACTGTAAGAAATGCCACCACTATTGCCGTCATTCACCAAGGAAAAATAGTAGAAAAAGGTTCTCATGCTGATCTCACTAAGGATCCTAATGGAGCCTACAGCCAGCTCATTAGTTTTCAAGAGACTAAGATTAATGAGACAGAACAGAATACTGCAGTTGAGACACACACAGAGGAAATTGTTACATATTCTTCTACACATTCAAGCCAACGATTTTCTTTCTTACAATCTGTAAGCCGAGTTTCAGGAGTTGGAAACAGCGAACTTGCTACAACAACCGGTGTCTTGGAAACAGATGGAGGAGAACATGAAGTGAATCCATCAGCAAAATCACAGCCACCTCTGGAAGTACCACTCCACCGCATAGCTTATCTAAACAAGCCTGAGATTCCAATCTTACTCTTAGGAACAATAGCTGCAGCAGCTAATGGAGCAATATTACCCATGTTTGGGTTTATGCTCTCCAAAATGGTAAACATTTTTTATGAGCCTGCAGATGAACTCCGAAAGGACTCAAAATTTTGGGCATTAATATTTGTTTCACTTGGTGTATCATCCTGCTTAGTTTCTCCTTTAAGGTCCTACTTCTTTGCTGTTGCTGGTGAAAATTTAATTAAAAGGATGAGACTGATTTGTTTTGAGAAAATAATTTGTATGGAAGTAAGTTGGTTCGACGAATCTGAGCATTCAAGTGCAGCACTTGGAGCAAGGCTTTCCACTGATGTAGCTTCTATTCGAGCTTTGGTTGGGGACGCACTTGGTTTACTTGTTCAGAATGTAGCTACTGCAATTGTTGGCTCGGTAATTGCATTTGAGGCAAACTGGCGTCTTGCTCTTATAATTCTTGTTTTGCTACCTCTGTTAGCACTAAATGGATATCTTCAGCAAAAGTTTATCCAAGGATTCACTGCAGATGGAAAGAAATTGTATGAGGAAGCAAGTCAAGTAGCAAACGATGCTATAAGTAGCATTAGAACAGTGGCTTCCTTTTGTGCTGAAGAGAAGGTGATGGAGTTGTACCAAAAGAAATGTGAAGCACCGATTAAGGCAGGCATAAGGCAAGGGATAATTAGTGGCATTGGTTTTGGGCTATCCTACTTCTTGTTGTTTTCAGTCTATGCATGCAGTTTCTATGCCGGAGCTAAACTTGTAGGAGATGGTAAAACATCGGTCTCCAATGTTTTTTGTGTCTTTTTTGCTCTAAATATGGCAGCTGTGGGGATCTCTCAATCTAGTTCCTTGGCCCCAGATTCAACTAAAGCAAAAGCTGCTGCTGCGACTATATTAGCTATTATTGATAGAAAATCAAGAATCGACCCCTGTGATGACTCTGGATTGACACTAGAAGACGTGAAGGGGCAAGTTGAGTTTCACCATGTAAGTTTCAAGTACCCCGCCAGACCAGATGTTCAAATATTCAGGGATCTTTGCTTGACCATTTGTTCAAACAAGACAGTTGCACTGGTGGGAGAAAGTGGAAGCGGAAAATCAACTGTAGTCTCATTATTGCAAAGATTTTATAACCCAGATTCAGGTCGCATTACACTTGATGGAATAGAAATCCAAAAGTTTCATGTTAAATGGTTAAGGCAGCAAATGGGCCTGGTAAGCCAAGAGCCCGTGTTGTTCAATGACACCATACGAGCTAATATTGCATATGGAAAGGGAAGAGATGCCACAGAGACAGAAATCATAACTGCTGCAGAAATGGCAAATGCTCACAAGTTCATTAGTAGTTTGCAGCAGGGGTATGACAGCATTGTAGGCGAACGAGGGTCTAAATTATCTGGTGGACAGAAGCAGCGTGTGGCAATTGCAAGAGCAATAATGAAGAATCCAAAAATATTACTACTAGATGAAGCCACCAGTGCCCTTGATGCTGAGTCTGAAAAAGTAGTTCAGGATGCACTGGATCGAGTAATGGTGGACAGAACCACCATTATAATAGCACATAGCTTATTTACTATTAAGGGTTCAGATTTGATTGCAGTCGTTAAGAATGGAGTCATTACAGAGAAAGGAAATCATGAAACATTGATAAAAAAAGGTGGTGACTATGCTTCCTTGGTAGCATTGCACACGGTTGCATCTAAAATTTAG 3747 0.4105 MAKGETSTNVVPFYKLFSFADSLDRALMFVGTIGAIANGLTTPLMTVVFGNLIDAFGGHTNPEEVVHDVSKVAVKFVYLGVGSFIGSYIQVSCWIVSGERQAARIRGLYLKAILRQDVSFFDMETNTGEAVGRMSSDTILIRDAMGEKVGQFIQLVASFIGGFVIAFIKGWLLTLVLLSSIPPVVFASALMSIVIAKVTSNGQVAYSEAASVVEQTIGSIRTVASFTGEMQALAHYNQSLIKAYRSGVQGGIASGLGFGSVLLIVFCTYGLAIWFGVKLILEKGYTGGNIVTIIFAIMTGSLSLGQASPSLSAFAAGQAAGFKMFATINRKPDIDAYDTTGQELVDIVGDIELRDICFSYPARPDEPIFNGFSLSIPKGTTAALVGKSGSGKSTIISLIERFYDPQAGQVLIDGINIKAFKLKWIRQKIGLVSQEPVLLTCSIKENIAYGNDGASDDEIKYAAHLANASKFIDKLPLGLDTMIGQHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDSESEKIVQEALDKIMTNCTTVIVAHRLSTVRNATTIAVIHQGKIVEKGSHADLTKDPNGAYSQLISFQETKINETEQNTAVETHTEEIVTYSSTHSSQRFSFLQSVSRVSGVGNSELATTTGVLETDGGEHEVNPSAKSQPPLEVPLHRIAYLNKPEIPILLLGTIAAAANGAILPMFGFMLSKMVNIFYEPADELRKDSKFWALIFVSLGVSSCLVSPLRSYFFAVAGENLIKRMRLICFEKIICMEVSWFDESEHSSAALGARLSTDVASIRALVGDALGLLVQNVATAIVGSVIAFEANWRLALIILVLLPLLALNGYLQQKFIQGFTADGKKLYEEASQVANDAISSIRTVASFCAEEKVMELYQKKCEAPIKAGIRQGIISGIGFGLSYFLLFSVYACSFYAGAKLVGDGKTSVSNVFCVFFALNMAAVGISQSSSLAPDSTKAKAAAATILAIIDRKSRIDPCDDSGLTLEDVKGQVEFHHVSFKYPARPDVQIFRDLCLTICSNKTVALVGESGSGKSTVVSLLQRFYNPDSGRITLDGIEIQKFHVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGRDATETEIITAAEMANAHKFISSLQQGYDSIVGERGSKLSGGQKQRVAIARAIMKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIIIAHSLFTIKGSDLIAVVKNGVITEKGNHETLIKKGGDYASLVALHTVASKI* 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0567 1248 Gene3D - 349 605 IPR027417 -
Apr3g0567 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 316 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0567 1248 SUPERFAMILY ABC transporter transmembrane region 669 988 IPR036640 GO:0005524|GO:0016021
Apr3g0567 1248 Pfam ABC transporter transmembrane region 28 302 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0567 1248 Pfam ABC transporter transmembrane region 682 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0567 1248 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 3 1244 - -
Apr3g0567 1248 SMART AAA_5 1031 1224 IPR003593 -
Apr3g0567 1248 SMART AAA_5 378 564 IPR003593 -
Apr3g0567 1248 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524
Apr3g0567 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 966 - -
Apr3g0567 1248 Gene3D ABC transporter type 1, transmembrane domain 74 977 IPR036640 GO:0005524|GO:0016021
Apr3g0567 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 343 589 IPR027417 -
Apr3g0567 1248 PANTHER - 3 1244 - -
Apr3g0567 1248 SUPERFAMILY ABC transporter transmembrane region 16 503 IPR036640 GO:0005524|GO:0016021
Apr3g0567 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 351 587 IPR003439 GO:0005524
Apr3g0567 1248 Gene3D - 994 1247 IPR027417 -
Apr3g0567 1248 CDD ABC_MTABC3_MDL1_MDL2 351 589 - -
Apr3g0567 1248 ProSitePatterns ABC transporters family signature. 490 504 IPR017871 GO:0005524
Apr3g0567 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 28 312 - -
Apr3g0567 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0567 1248 CDD ABC_MTABC3_MDL1_MDL2 1004 1239 - -
Apr3g0567 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 993 1241 IPR027417 -
Apr3g0567 1248 Pfam ABC transporter 370 518 IPR003439 GO:0005524
Apr3g0567 1248 Pfam ABC transporter 1024 1172 IPR003439 GO:0005524
Apr3g0567 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1004 1241 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0567 Apr-Chr3 12433739 12439624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0567 11 1242 Calmodulin-binding Proteins AT2G36910 42.720 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0567 K05658 - gmx:100800293 1774.99