Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0554 ATGGAGAAAGAGGTTGTGGAAAACCTTTGGAATGGTAACAGAGATACTCAAATTCAAGCAGCAGTGGAACTGAGGAAATTCACCAGAAAGCAGAGGCACAATTTGGCAGAACATGGAGTTATGGTACCTCTAATTTCCATGCTTCATTCTCAAGACTATGAAGCCATCGAAGTTTCTCTGTCTGCTCTACTTAGCCTTGCCTTTGGCAGTGAACGAAACAAGTCCAGGATCATCAAATCAGGAGCTTTGCCAGTATTGCTGAGCCTCCTCCATTGCCAAAGCCAAACAGTGGTGGAATTAACAATAGCCACGTTGCTAACCATCTCTTCTTGCAATGCAAATAGGGTAGCAATTGCTTCATCTGGGGCTATTCAACTCTTGGCTCAATTTCTCAACAATAGCACTAGTAGCACTCAGTCCCAGCTTGACACTGTAGCCACTCTCCACAACCTCTCAACTTGCCAAGAGATTATTACTCCATTCATTGTCTCTTCTGGGGTTATACTTTCCTTGCTTGAACTGATCCACACATCAGAAAAATCATCAACATTGGTTGAGAAAGCAATTGGGTTGCTAGAACATATTGTGTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTATTGGAGGAGCAGTTAGGACACTGGTGGAAACTATTGAAGATGGGTCATTTCAAAGCAAAGAGCATGCAGTAGGGACACTACTACTCATTTGCCAAAGCTGTAGAGATAAGTATAGAGGAATGATCTTGAAAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGAACTTGGAGAGCCAAAAATTTGGCTAAGAACTTGTTGTTGCTTCTGAGGGATTGCTCTAATTATGGTTCATCAAGTAAACAAGTTAATCATGGGTTTATAGAACGGATCATGGAAGAAATTGATGATGCAGAAGGGGAGGAACTGGCAGAGACCACGTTGAGATTGGTAGAGGAGATGGTTGCAAAACTAAGTATATAA 996 0.4257 MEKEVVENLWNGNRDTQIQAAVELRKFTRKQRHNLAEHGVMVPLISMLHSQDYEAIEVSLSALLSLAFGSERNKSRIIKSGALPVLLSLLHCQSQTVVELTIATLLTISSCNANRVAIASSGAIQLLAQFLNNSTSSTQSQLDTVATLHNLSTCQEIITPFIVSSGVILSLLELIHTSEKSSTLVEKAIGLLEHIVSSSESALCEAASIGGAVRTLVETIEDGSFQSKEHAVGTLLLICQSCRDKYRGMILKEGVMPGLLQLSVDGTWRAKNLAKNLLLLLRDCSNYGSSSKQVNHGFIERIMEEIDDAEGEELAETTLRLVEEMVAKLSI* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0554 331 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Apr3g0554 331 PANTHER U BOX DOMAIN-CONTAINING 1 310 - -
Apr3g0554 331 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Apr3g0554 331 SMART arm_5 70 110 IPR000225 GO:0005515
Apr3g0554 331 SMART arm_5 28 68 IPR000225 GO:0005515
Apr3g0554 331 SMART arm_5 199 240 IPR000225 GO:0005515
Apr3g0554 331 SMART arm_5 154 197 IPR000225 GO:0005515
Apr3g0554 331 SMART arm_5 111 153 IPR000225 GO:0005515
Apr3g0554 331 Gene3D - 3 330 IPR011989 -
Apr3g0554 331 SUPERFAMILY ARM repeat 4 312 IPR016024 -
Apr3g0554 331 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 201 IPR000225 GO:0005515
Apr3g0554 331 Pfam Armadillo/beta-catenin-like repeat 71 105 IPR000225 GO:0005515
Apr3g0554 331 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0554 Apr-Chr3 12140679 12142103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0554 3 283 U-box Gene Family AT2G23140 33.217 2.56e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0554 - - gmx:100811007 524.242