Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0548 ATGGACTCACCGAGCAATCACCACGCCGTCGACGGAGATGCCAACGACGTGAGGCCCTTTTCCCACAGAGACGAAGAAGACGACAAGCCCCAACCTCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACAACGATTGCTCAATTCATCAAGCACTTTGGTAAATACGGTGAGATAACGGATTCCGTTATAATGAAGGACCGGAAGACCGGGCAGCCTCGCGGTTTCGGTTTCATAACTTATGCAGATCCCTCTGTGGTTGATAAGGTTATTGAGGACACTCACATTATCAATGGCAAGCAGGTGGAGATTAAACGGACCATACCACGGGGCGCAGTTGGCTCTAACTCCAAGGACTTCAGAACGAAGAAGATTTTTGTTGGTGGAATTCCTTCCACTGTCTCTGAAGATGAATTTAGGGACTTCTTTACACGCTATGGAGAAATCAAAGATCACCAAATAATGCGGGACCACTCTACTAATCGTTCACGTGGGTTTGGGTTTATCACCTATGACTCTGAAGAAGCTGTGGATGACCTCTTAGCTGCAGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAGAAGCCTAACCCACCTCCTTCATCATCTAAGCGCTATAATGACTCACGATCTTCATATGGTGGTGGATATGGAGATACATATGATGGATTTGGTGGTAATTTTGGCATTGGGAGCTATAGATCAGGTGGTCCATATGGAGGTAGGGGAGGTGCTTATGGTGGCTTTGGTGGTGAATTTGGTGGGTATGGAGGATATGCTGGTGCCATGGGGCCTTACAGAGGTGATCCTTCACTTGGATATGCTGGTCGCTATGGTGGGAGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGGACCTAGTGAGGGTTATGGAGCATATGGTGGTGATGGTTCCTCTGGTAGTGCCTATGGAGGCAGCTATGATGCTAGCCTAGGAGGTGGGTATGGGGGTCCTGGTGGAAGCTCCTTTTATGGGGCTAGAGGAGGATATGGTGGTGCAGGAACTGGCCGATATCATCCTTATGGAAGATAG 1104 0.4873 MDSPSNHHAVDGDANDVRPFSHRDEEDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVSEDEFRDFFTRYGEIKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLAAGNKIEFAGAQVEIKKAEPKKPNPPPSSSKRYNDSRSSYGGGYGDTYDGFGGNFGIGSYRSGGPYGGRGGAYGGFGGEFGGYGGYAGAMGPYRGDPSLGYAGRYGGSFGRGYDLGGYGGPSEGYGAYGGDGSSGSAYGGSYDASLGGGYGGPGGSSFYGARGGYGGAGTGRYHPYGR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0548 367 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 367 - -
Apr3g0548 367 SUPERFAMILY RNA-binding domain, RBD 128 239 IPR035979 GO:0003676
Apr3g0548 367 SMART rrm1_1 132 205 IPR000504 GO:0003723
Apr3g0548 367 SMART rrm1_1 42 113 IPR000504 GO:0003723
Apr3g0548 367 Gene3D - 41 120 IPR012677 -
Apr3g0548 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 201 IPR000504 GO:0003723
Apr3g0548 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Apr3g0548 367 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 367 - -
Apr3g0548 367 MobiDBLite consensus disorder prediction 1 41 - -
Apr3g0548 367 MobiDBLite consensus disorder prediction 205 227 - -
Apr3g0548 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Apr3g0548 367 MobiDBLite consensus disorder prediction 1 32 - -
Apr3g0548 367 Gene3D - 122 239 IPR012677 -
Apr3g0548 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Apr3g0548 367 SUPERFAMILY RNA-binding domain, RBD 37 120 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0548 Apr-Chr3 12051294 12058310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0548 37 185 Eukaryotic Initiation Factors Gene Family AT1G71770 26.347 3.42e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0548 K12741 - gmx:100813165 468.003