Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0544 ATGTCCGGTAACCCAAACATCCTTCGTTTTCCTCACACCAGGCTCGACCCATCCAACATGCCAAAATGGAACACCTTCTTCACCTGCAACTACAACAAACCCCAAACCCACTTTCTCTTCTCCTTCACTGGATCGGGTCGCTCCAAAACCTTCCGGGTCAGCACCGCGAAAATCCGTTGCCAATTCTCCACGTCTGAAAACGGGGACTCTGGTTGCCGGTTCCCAAACGTTCTCGCAAAACGGGTCGGGTTCGTGACCTCCATTTTACCGGGCGGTAGCTGGTGGACCTTGCCGGAGCACCAGGAACACGGCGCGGGACCGCTGACGGCGATGGTCGCTCTCCGGCGAACATGGGAGTTGGTTTCCGACCAGCGATTGGTTGCGTTTGTGGCAGTTGGGTCCCTCGTTGTCGCTGCTCTTTCAGAAATCACCATGCCGAGTATATTGGCAGCATCGATATTTTCAGCGCAAAGTGGTGAGACCGTGGCATTCTCTAGGAATGCACTGTTTTTGGTTCTTCTGTGTTTAACTTCAGCCATTTGCAGTGGTCTGAGAAGTGGCTGTTTTGGAATTTTGAATGTAACCTTGGTGAAGCGTCTGCGAGAAAATTTATATACAGCGATTCTTTTTCAGGACATATCCTATTTTGATAAAGAAAGAGTTGGTGACTTGACAAGCAGGCTTGCAGTAGATTGTCAACAACTATCCCATGTTATAGGATATGATCTTCAGTTGATATTACGCAACACTTGTCAGGGAACAGGAGCAATAATCAATTTGATGGCTTTATCTTGGCCTCTGGCATTTTCCGCATTGGTGACTTGTTCTATTTTATCAGCAATTTTCCTGGTTTATGGCCAGTATCAAAGAAAAGCTGCAAAGTTAATTCAAGATTTCACAGCTTGTGCCAGTGATGTATCTCAGGAGACACTTTCTTCAATTAGAATTGTCCGAGCTTATGGAACAGGAAAAAAAGAATTTGGAAGGTACAAGCGATGGTTACAGAGCTTAGCATTTGTAAATGGTCGAGAGAGTGTGGCTAATGGGTTCTGGAACCTGATCTTTAACACCTTATACCGTTCAACTCAGATATTTGCAGTGCTATTAGGAGGGATATCTATTCTCCGATGTGGTGTAACTGTGGAACAACTTACCAAGTATGTACTATACTGTGAGTGGTTGATTTATGCTACTTGGAGGGTCACAAACAGCTTAACATCATTACTACAGTCCATTGGAGCATCGGAACAAATTTTCCAACTAATGAATCTTTTACCTAGTGACCAATTCATAGTCAAAGGTGTGAAGTTGCAAAGGTTAGTGGGGCATATTCAGTTTGCAAATATCAACTTCTTATATGCAGGCCAAGATAGAATGCCTGTTCTAGAACACTTAAACTTCTCCATAGAAGCAAATCAAGTCGTTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTGCTCAACCTTTTACTTTGTCTGTATGAACCTAATAGTGGTCAGATATATATTGATGGGTTCCCTCTTCAAGAGTTGGATGTCAGGTGGGTGAGACAGAACATCGGCTATGTTGCACAGGAATCCCATCTCTTTCACATGGACATCAAGTCAAACATAAAGTATGGTTGTCCTAGGAACATAAAACAAGAAGATATTGAATGGGCAGCTAAAAAGGCCTATGCCCATGACTTTATTTCTTCACTTCCTAATGGATATGAAACCCTAGTTGACGACAATGTACTTAGTGGTGGACAAAAACAGCGGATTGCCATTGCCAGGGCCATTCTTAGGGACCCAGTTATTATGATACTTGATGAAGCAACCAGTGCTCTAGATTATGAAAGTGAGCATTATATCAAGGAAGTGTTGTATGCGATAAAAGATGAATCTAAAACAAGAACCATCATCATAATTGCACATAGGCTTTCTACTATTAAAGCTGCTGATAGGATCTTTGTTATGGATGATGGTCGCATCATTGAGATGGGAAACCATGAAGAGCTTCTGCTCAAGGATGGGCTCTATGCAAAGTTATATAAAATTCAATCAGGTATTTTGACTTGA 2067 0.4301 MSGNPNILRFPHTRLDPSNMPKWNTFFTCNYNKPQTHFLFSFTGSGRSKTFRVSTAKIRCQFSTSENGDSGCRFPNVLAKRVGFVTSILPGGSWWTLPEHQEHGAGPLTAMVALRRTWELVSDQRLVAFVAVGSLVVAALSEITMPSILAASIFSAQSGETVAFSRNALFLVLLCLTSAICSGLRSGCFGILNVTLVKRLRENLYTAILFQDISYFDKERVGDLTSRLAVDCQQLSHVIGYDLQLILRNTCQGTGAIINLMALSWPLAFSALVTCSILSAIFLVYGQYQRKAAKLIQDFTACASDVSQETLSSIRIVRAYGTGKKEFGRYKRWLQSLAFVNGRESVANGFWNLIFNTLYRSTQIFAVLLGGISILRCGVTVEQLTKYVLYCEWLIYATWRVTNSLTSLLQSIGASEQIFQLMNLLPSDQFIVKGVKLQRLVGHIQFANINFLYAGQDRMPVLEHLNFSIEANQVVAIVGLSGSGKSTLLNLLLCLYEPNSGQIYIDGFPLQELDVRWVRQNIGYVAQESHLFHMDIKSNIKYGCPRNIKQEDIEWAAKKAYAHDFISSLPNGYETLVDDNVLSGGQKQRIAIARAILRDPVIMILDEATSALDYESEHYIKEVLYAIKDESKTRTIIIIAHRLSTIKAADRIFVMDDGRIIEMGNHEELLLKDGLYAKLYKIQSGILT* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0544 688 Gene3D ABC transporter type 1, transmembrane domain 109 428 IPR036640 GO:0005524|GO:0016021
Apr3g0544 688 Gene3D - 434 686 IPR027417 -
Apr3g0544 688 SMART AAA_5 471 659 IPR003593 -
Apr3g0544 688 Pfam ABC transporter transmembrane region 134 392 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0544 688 PANTHER ATP-BINDING ABC TRANSPORTER 66 686 - -
Apr3g0544 688 CDD ABC_6TM_TAP 131 418 - -
Apr3g0544 688 SUPERFAMILY ABC transporter transmembrane region 115 426 IPR036640 GO:0005524|GO:0016021
Apr3g0544 688 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 129 410 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Apr3g0544 688 PANTHER ABC TRANSPORTER B FAMILY 66 686 - -
Apr3g0544 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 683 IPR027417 -
Apr3g0544 688 Pfam ABC transporter 462 610 IPR003439 GO:0005524
Apr3g0544 688 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 444 682 IPR003439 GO:0005524
Apr3g0544 688 ProSitePatterns ABC transporters family signature. 582 596 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0544 Apr-Chr3 11915035 11961527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0544 199 683 Calmodulin-binding Proteins AT2G36910 34.809 7.84e-69 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0544 - - aprc:113857420 1332.78