Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0534 ATGGAGAAAGTGAAACTATCTGCTAATTATGATTCTGATGGCGGCGGGGATGAGGAAGGTTCATTTCCGATATTCAAGCTGCCAGAGAGTGAAAATTTTGGACAGCAAAGCAGTAGAAGAGAGGAAGATGATGCAAAAGAAAGAAGATTGGATGGAATTGCTCACTCTAATACTGCAAGCAGTAAGTGGATGGCATTTGCTACGCAGCCTGAAATCACAGTTGATGGCAAATTTACAATAAAGGATCAAAGTACAACAAAAGAAAATGAGTTGAGAAATCATCCAAGAGAGCAATCATCTTCAGATCATCGAACTTTAACTGAAGCGACCATAGCTGAGAGAGCTGCTGAATGGGGTGTTGTGGTGAATTCTGGGAATATCAAAGCAATGGAGGTGGAGACAGGGAGTGCTTCTTTTGATGGTGACCAATGCAAAATCTTATCGGATAGATTTGTTGAATCAACACGGACGTCGTCGGGGGAATCAAATTATGGATCTGAACCATCATCATCAGGGCTGTTCCCCAGAGTGTCACAAGAGTTGAAGGATGCACTGGCGACGCTGCAACAGACATTTGTTGTCTCAGATGCAACCAAGCCAGACTGCCCAATCATGTATGCCAGCAGTGGCTTTTTTGGCATGACTGGCTATTCCTCAAAGGAGGTTATTGGAAGGAATTGCCGATTTCTTCAGGGGCCTGATACAGACAAGAATCAAGTGGCGAAAATCCGGGATGCAGTTAGAAATGGGAAAAGTTATTGCGGCAGGATTTTAAACTACAAGAAAGATGGAACTCCATTTTGGAATCTTCTCACTGTAACCCCCATCAAAGATGACCATGGCAATACTATTAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCGTGAATGAAAAGGAGTTACGACCAAATGGATTGCCTAAGTCATTAATTCGTTATGATGCTCGCCAAAAGGATAAAGCTTTGGGTTCCATCACTGAGGTAGTCCAAACTGTGAAGGACCCAAAATCCATTATCCAGGATAGGAATGATGATACTTATACCAAGCATGAAGAGCAAGAGAAATTCAATTTGGATTTTGTATTGCCAAAGTCTGCTGAAATTGGAAATACAAGTACACCTGATAGACAAACTTCCACCCTAAACATCCAACGTGTGAGTTTTTGTCTGGACAAGAGCAAGACATCTCGAAAATCAGCACGGATTTCTTTCATGGGTTTTAAAGGGAGATCTCTGAGTTCTGCAGGGAGAGGTGAGGAGAAGCCCATTGTTGAACCAGAAGTTTTGATGACCAAGGAAATAGAGTGGTCTAATAGTTGGGAGCGTTCGCAAAGAGAGAGAGATATAAGGCAGGGAATTGACCTAGCAACAACGTTGGAGCGGATAGAGAAGAACTTTGTGATATCTGATCCTAGACTTCCAGATAACCCAATCATATTTGCATCTGATAGCTTTCTTGAACTTACAGAGTATACACGAGAAGAAATTTTAGGACGAAACTGCCGGTTTCTTCAAGGACCAGAAACAGATCAGGCAACTGTTTCCAAGATTCGGGATGCCATCAGAGAACAGAAGGAAATTACAGTTCAATTGATCAACTATACTAAGAGTGGAAAGAAGTTCTGGAATTTGTTTCACTTGCAACCAATGCGTGACCAAAAGGGTGAACTTCAATACTTTATTGGTGTTCAACTAGATGGAAGTGATCATGTAGAACCCTTAAAAAACCGTCTATCTGAGACAGCTGAGAAACAAAGTGCCAAGTTGGTGAAAGCCACTGCAGAAAATGTTGATGAAGCAGTCCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCACACCCTGTCTTTCCACGACCTCACAAAAAGGACAATCCTTCTTGGTTAGCAATACAGAAGATAACTGGAAGAGGTGAAAAAATTGGTCTGCACCATTTTTTGCCCATTAGGCCCTTGGGTTGTGGAGATACTGGCAGTGTTCATTTGGTGGAACTCCAAAGTACTGGGGAATTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGCTAAATCGTAATAAGGTTCACCGAGCATGCATTGAGAGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAACACTATACACATCATTTCAGACTTCTACACATGTATGTTTGATTACTGACTTCTGCCCTGGGGGAGAGTTGTTTGCATTGCTTGACAAGCAACCCATGAAGATTTTCAAAGAGGAATCAGCAAGATTCTATGCGGCAGAGGTTGTCATTGGTTTGGAATATCTGCACTGTTTAGGTATAATTTATCGTGACCTAAAGCCTGAAAATATCTTACTACAGAAGGATGGTCATGTTGTATTAACTGATTTTGATCTATCATTTATGACACCTTGTAAACCACAGGTTGTGAAATACTCACTTCCTAGAAATAGAAGATCACGAAATAGACCACCACCAACATTTGTTGCAGAGCCAGTTACACAATCAAACTCATTTGTTGGAACTGAAGAATACATTGCCCCTGAAATTATAATCGGAGCCGGGCATACGAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAAATGCTCTATGGTCGGACACCATTTAGGGGGAAGAATAGACAGAAGACATTTTCCAATATCTTACACAAGGATCTTACTTTTCCAAGCAGCATCCCGGCTAGTCTAGCAGCCAGGCAGTTGATTAATGCACTATTGCAAAGAGACCCAATCAATCGCCTAGGTTCAACTACTGGTGCCAATGAAATCAAACAACACCCTTTCTTCCGGGGAATCAATTGGCCTTTAATTCGCAACATGAGTCCACCCCCATTAGATGTTCCTCTTCAATTGATAGGAAAAGATCCAAAGGCAAAGGATATGAAGTGGGAAGATGATGGGGTGCTAATTAGCTCGATTGATTTGGATATTTTTTGA 2976 0.4157 MEKVKLSANYDSDGGGDEEGSFPIFKLPESENFGQQSSRREEDDAKERRLDGIAHSNTASSKWMAFATQPEITVDGKFTIKDQSTTKENELRNHPREQSSSDHRTLTEATIAERAAEWGVVVNSGNIKAMEVETGSASFDGDQCKILSDRFVESTRTSSGESNYGSEPSSSGLFPRVSQELKDALATLQQTFVVSDATKPDCPIMYASSGFFGMTGYSSKEVIGRNCRFLQGPDTDKNQVAKIRDAVRNGKSYCGRILNYKKDGTPFWNLLTVTPIKDDHGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKDKALGSITEVVQTVKDPKSIIQDRNDDTYTKHEEQEKFNLDFVLPKSAEIGNTSTPDRQTSTLNIQRVSFCLDKSKTSRKSARISFMGFKGRSLSSAGRGEEKPIVEPEVLMTKEIEWSNSWERSQRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVSKIRDAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLKNRLSETAEKQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSHPVFPRPHKKDNPSWLAIQKITGRGEKIGLHHFLPIRPLGCGDTGSVHLVELQSTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCPGGELFALLDKQPMKIFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVVLTDFDLSFMTPCKPQVVKYSLPRNRRSRNRPPPTFVAEPVTQSNSFVGTEEYIAPEIIIGAGHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPINRLGSTTGANEIKQHPFFRGINWPLIRNMSPPPLDVPLQLIGKDPKAKDMKWEDDGVLISSIDLDIF* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0534 991 ProSiteProfiles PAC domain profile. 251 305 IPR000700 -
Apr3g0534 991 Gene3D Phosphorylase Kinase; domain 1 655 739 - -
Apr3g0534 991 ProSitePatterns Protein kinases ATP-binding region signature. 662 685 IPR017441 GO:0005524
Apr3g0534 991 PANTHER FLIPPASE KINASE 1-RELATED 145 990 - -
Apr3g0534 991 SMART pas_2 457 526 IPR000014 -
Apr3g0534 991 SMART pas_2 179 248 IPR000014 -
Apr3g0534 991 CDD PAS 478 570 IPR000014 -
Apr3g0534 991 Gene3D Transferase(Phosphotransferase) domain 1 740 956 - -
Apr3g0534 991 Pfam PAS domain 198 294 IPR000014 -
Apr3g0534 991 Pfam PAS domain 478 570 IPR000014 -
Apr3g0534 991 SMART serkin_6 656 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0534 991 Pfam Protein kinase domain 659 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0534 991 TIGRFAM sensory_box: PAS domain S-box protein 204 294 IPR000014 -
Apr3g0534 991 TIGRFAM sensory_box: PAS domain S-box protein 481 572 IPR000014 -
Apr3g0534 991 Coils Coil 579 599 - -
Apr3g0534 991 SUPERFAMILY PYP-like sensor domain (PAS domain) 198 290 IPR035965 -
Apr3g0534 991 SMART pac_2 254 296 IPR001610 -
Apr3g0534 991 SMART pac_2 532 574 IPR001610 -
Apr3g0534 991 ProSiteProfiles Protein kinase domain profile. 656 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0534 991 MobiDBLite consensus disorder prediction 35 53 - -
Apr3g0534 991 ProSiteProfiles PAS repeat profile. 177 250 IPR000014 -
Apr3g0534 991 CDD STKc_phototropin_like 654 965 - -
Apr3g0534 991 ProSiteProfiles PAC domain profile. 529 583 IPR000700 -
Apr3g0534 991 CDD PAS 204 293 IPR000014 -
Apr3g0534 991 Gene3D PAS domain 191 357 - -
Apr3g0534 991 MobiDBLite consensus disorder prediction 84 104 - -
Apr3g0534 991 SUPERFAMILY Protein kinase-like (PK-like) 635 967 IPR011009 -
Apr3g0534 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Apr3g0534 991 Gene3D PAS domain 444 608 - -
Apr3g0534 991 ProSiteProfiles PAS repeat profile. 455 528 IPR000014 -
Apr3g0534 991 PANTHER BNAA02G07840D PROTEIN 145 990 - -
Apr3g0534 991 SUPERFAMILY PYP-like sensor domain (PAS domain) 474 570 IPR035965 -
Apr3g0534 991 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0534 Apr-Chr3 11431713 11459996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0534 76 990 AGC Kinase Gene Family AT5G58140 72.717 0.0 1314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Apr3g0534 Pkinase 1.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0534 K20715 - gmx:100820096 1671.75