Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0533 ATGGCAACGTTGTTGAGAAAGCTGTGCGAGACGGCGTCCTTGAAACGATCCTCTTCCAATTCAAGCACAAACACTTCATCATCGTCACCTCTGGGCGCGTTCGACCCTCTCCCTGCCGACATACTCGCACAAATCGTTCTTCTATTGGGCCCCAAACACGCGGCAATACTCTGCGTCGTTTGCAAGTCGTGGCGAAGCCTCGTCTCCAACAACGCCTTCTGGATCCAGTTCCTCCAAACCCACCACCCTCACGCCTCGCTCTTCGCCGAAACCACTTTGAGCTCCGGCTATCCTCTTCCCATCTTGGTTGCTCACAACTTGCCACGTGTTTCGTTCCAGCACGTTTATGCCCAACGCGAACGACTCCCCGCTTCCGTTATCATCGACGGTGGCTCTGGCTACTGCAAGTTCGGTTGGAGCAAAGACGCTGCTCCTTCAGGGCGATTCGCGACCTTTCTGGAATTTGGTAACGTGGAGACGCCAATGTATTCTAGACTCCGGCACTTTTTTACTACTATCTATAGCAGGATGCAGGTGAAGCCAAGTTCTCAACCTGCTGTCGTCTCTATACCAATATGCCATTATGATGATACTGAATCTGCCAAAGCATCAAGACAGCAGCTTAAAGAAGCAATCTATAGTGCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTTAATCAGGGGACTTTAGCTCTGTATGCTGCAAAACAGACTTCTGGGATAGCTGTTAATATAGGTTTCCAAGTCACATCTGTAGTTCCAATTTTCAATGGTAAAGTGATGCGAAAGGTTGGAGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTAACAGGATTTCTTAGAGAGCAAATGCAACTAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGTTATGTTGCTGTAGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGTGGAAGGGTTGTTTACACTCTCAAAAGAGAGATTTCTAACAGGAGAGATTTTATTCCAGCCACGTCTTGCTGGGGTGCGAGCAATGGGTTTGCACCAGGCCATCGCTCTTTGTATGGATCATTGCTATTCTGCTGAATTAGCTGCTGACAATGATTGGTACAAGACTGTAGTCTTATCGGGGGGGACTGCTTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAAGAACTTCATTCGTTACTTCCTCCTTGTGTATCCAGTGGAATTAGAGTCATACCTCCTCCATTCGGTGTGGATACTGCATGGTTTGGTGGCAAGATTATTGGCAGTTTGAGCACCTTTCCTGGTCCCTGGTGTACCACGAAAAAGCAATTCCGTCAGAAGTCTAAACTTGACCGCATATGTCCATGA 1392 0.4691 MATLLRKLCETASLKRSSSNSSTNTSSSSPLGAFDPLPADILAQIVLLLGPKHAAILCVVCKSWRSLVSNNAFWIQFLQTHHPHASLFAETTLSSGYPLPILVAHNLPRVSFQHVYAQRERLPASVIIDGGSGYCKFGWSKDAAPSGRFATFLEFGNVETPMYSRLRHFFTTIYSRMQVKPSSQPAVVSIPICHYDDTESAKASRQQLKEAIYSALFDMNVPAVCALNQGTLALYAAKQTSGIAVNIGFQVTSVVPIFNGKVMRKVGVEVVGLGALKLTGFLREQMQLNNISFESLYTVRTLKEKLCYVAVDYEAELLKDTQASFEAVEGLFTLSKERFLTGEILFQPRLAGVRAMGLHQAIALCMDHCYSAELAADNDWYKTVVLSGGTACLPGLAERLEKELHSLLPPCVSSGIRVIPPPFGVDTAWFGGKIIGSLSTFPGPWCTTKKQFRQKSKLDRICP* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0533 463 ProSiteProfiles F-box domain profile. 31 77 IPR001810 GO:0005515
Apr3g0533 463 Gene3D - 230 427 - -
Apr3g0533 463 Gene3D - 126 453 - -
Apr3g0533 463 Pfam F-box domain 37 75 IPR001810 GO:0005515
Apr3g0533 463 Gene3D Actin; Chain A, domain 4 273 355 - -
Apr3g0533 463 Gene3D - 19 124 - -
Apr3g0533 463 PANTHER MACRONUCLEAR ACTIN 79 453 - -
Apr3g0533 463 SUPERFAMILY F-box domain 24 98 IPR036047 GO:0005515
Apr3g0533 463 PANTHER ACTIN 79 453 IPR004000 -
Apr3g0533 463 SUPERFAMILY Actin-like ATPase domain 125 245 IPR043129 -
Apr3g0533 463 SUPERFAMILY Actin-like ATPase domain 240 449 IPR043129 -
Apr3g0533 463 SMART fbox_2 37 77 IPR001810 GO:0005515
Apr3g0533 463 SMART actin_3 123 452 IPR004000 -
Apr3g0533 463 Pfam Actin 173 448 IPR004000 -
Apr3g0533 463 CDD NBD_sugar-kinase_HSP70_actin 126 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0533 Apr-Chr3 11399748 11410887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0533 172 445 Cytoskeleton Gene Families AT3G12110 32.394 7.58e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0533 K16616 - gmx:100804254 811.601