Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0530 ATGCGAGTGAAGTGCTCGTTTTGTCACTCTGCTCAATTGGGAAGAAGGGCACGCATTATTCGCCGTTGGATTCAACTTGTTGCTGCTCCTCACTCACTCATTTTTTCCGAAGGGATGAGTTCATTCTCCATCACGCGGAAAAAGACTCCATTCCAGAAACACAGAGAAGAGGAGGAGGCAAAGAAGAAAAGAGCGGAAGATGAGACTGCTCGCCTGTATGCTGAGTTTGTAGAGTCATTTCAAGGTGATAGTACTCCTGGGTCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAAATTTAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATTCCTCCTCCAATGGCAACCAAGGGGAAAGAACCGGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGAAAATCAAGAAACATTGATCATTTTATGGAGGAGCTAAAGCATGAACAAGAGATGAGGGAAAGGCGAAATCAAGAACGTGAACATTGGCGTGATGGGCGTCATGGAGAACATTCTATGTCTAGTCGCTTTGATGAACTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGACGATGGTGATCCACAAACTACAAATCTTTATGTTGGAAATCTTTCACCCAAGGTTGATGAAAATTTTCTGCTCCGCACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCTAGGACAGAGGAGGAGCGAAGGCGGCAAAGAAATTGTGGCTTTGTTGCTTTCATGAACAGAGCTGATGGGCAGGCTGCAAAAGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCGCAAGCACTACCTGCACCTCCACCAGGCCATATGGCAATCAGGAGTAAGGAGGGTAGTACTGTGATCCTGTCTGGCCCTTCTGGTCTGCCGGTGACATCTGTGCCTAATCAGAACTCTGAATTGGTTCTAACTCCTAATGTTCCGGATATAATGGTTACACCTCCTGAGGATGAACATCTAAGGCATGTCATTGATACAATGGCTTTGTATGTCCTTGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAATTTTTTGTTTGTTCTTGGCTCGAAGGAACATACCTACTATGTTTGGAGACTCTACTCATTTGCTCAGGGTGATACTCTTCAAAGATGGAGGACTGAACCATTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCCCATTACCAACTTCAAAAAGTCCAGAACATGAAAAGGAATCTGGCACCACTCATGCTGGAGGAAGAAGCAGGCGTGTGGAGCCTGAAAGAACACTGACCGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACACTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTAGATAATGCTGATGCAGCCGGCGAGATTGTTGAAGTTCTGACTGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACTAAGTTTGAAGCAACGTTGCCGGACATAATGGAGAGTTTTAATGACCTGTACCGTAGCATAATGGGGCGGATTACTGCTGAAGCCCTAAAGGAACGAGTGCTGAAAGTTTTGCAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGCCTAAGAGCCACTTTTCTTCGACCTGGGAACTCTGGGGTAATACCATTCCATTCCATATGTGGTGATGCTCCTGAGATTGAGCAGAAGATCACTTCTGAAGATACAGTTTTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAATGCAGGAGCTAATGAATCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGGGGTAGAGAAATGATGGTTGCACGCTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTACGAACTAGATGACGAATTGAAATATGCCCACAACCAAGTGAGTTCAGGGAAATATTCAAGTAATCAGGGAGAAACAAGTGCTGAGCCTGAACCAGTAGGACTGTCTGGATGGAACCATTATGGGGATGAAGATTTGCCGTCACAGGGCAAAGGGTCTGTGTCTTTAGCCCCAACCATTCCTATTCCACAGCCTGAACTTAAAGCCTTCACAAAAAAGGAGAAGAATGATCCAGTTTTGCCTGCCTCTAAATGGGCCCGGGAGGATGATGAGAGTGACGATGAACAAAGGAGAAGTGGAAAAAATCTTGGCTTAAGCTACTCATCTTCTGGTAGTGAGAATGTTGCTGATGGTCCTATTAAAGCTGATGAATTGGAGTCTGCTGCTGATACAAGTTTTTCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAAAGGCAAAAGCTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGTGAGTCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTTTGGCACATAGGAAACGGCTGCAAGTGGAGTATGGGCTATCAGATTCTGTTGAAGATGGTCGAGGCAATAGAAGATCTTCGGAGAGGAGAGATAGGCATGATGTTTCAAGGAAACGGCACCGCAGCCGAAGTCCAAGTAGTAGTCCACAGCCAAAATTATCAGGTAAAGACAGAGAAAGAGAACATGATTTAGAAAGGGATCAAGAGAGACAAAGAGATAGAAGTTATGATTTTGACAGTGATAGAGGAAGGGACCGGCACCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGATAGAGGCCGAGACAGGGACAGGAGAAGACGGACCAAATAA 3027 0.445 MRVKCSFCHSAQLGRRARIIRRWIQLVAAPHSLIFSEGMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTINPNDKFKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPMATKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHGEHSMSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGLPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPTSKSPEHEKESGTTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKITSEDTVFGGKTNQDAALAMGRGAAMQELMNLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNQGETSAEPEPVGLSGWNHYGDEDLPSQGKGSVSLAPTIPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQRRSGKNLGLSYSSSGSENVADGPIKADELESAADTSFSAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVLAHRKRLQVEYGLSDSVEDGRGNRRSSERRDRHDVSRKRHRSRSPSSSPQPKLSGKDREREHDLERDQERQRDRSYDFDSDRGRDRHREKSGSRERDDHDKDRGRDRDRRRRTK* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0530 1008 MobiDBLite consensus disorder prediction 448 480 - -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 947 1001 - -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 817 831 - -
Apr3g0530 1008 ProSiteProfiles CID domain profile. 481 626 IPR006569 -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 84 219 - -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 48 67 - -
Apr3g0530 1008 SMART rrm1_1 225 301 IPR000504 GO:0003723
Apr3g0530 1008 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 298 IPR000504 GO:0003723
Apr3g0530 1008 MobiDBLite consensus disorder prediction 455 480 - -
Apr3g0530 1008 SUPERFAMILY RNA-binding domain, RBD 217 312 IPR035979 GO:0003676
Apr3g0530 1008 PANTHER - 42 1003 - -
Apr3g0530 1008 SMART surpneu2 371 425 IPR000061 GO:0003723|GO:0006396
Apr3g0530 1008 MobiDBLite consensus disorder prediction 137 207 - -
Apr3g0530 1008 Pfam Surp module 371 423 IPR000061 GO:0003723|GO:0006396
Apr3g0530 1008 SMART 558neu5 488 623 IPR006569 -
Apr3g0530 1008 SMART cwf21_2 857 906 IPR013170 -
Apr3g0530 1008 Gene3D - 857 908 - -
Apr3g0530 1008 Pfam cwf21 domain 858 902 IPR013170 -
Apr3g0530 1008 SUPERFAMILY ENTH/VHS domain 485 622 IPR008942 -
Apr3g0530 1008 CDD RRM_SR140 223 306 IPR035009 -
Apr3g0530 1008 PANTHER RNA PROCESSING PROTEIN LD23810P 42 1003 - -
Apr3g0530 1008 Coils Coil 858 878 - -
Apr3g0530 1008 ProSiteProfiles SAP motif profile. 675 709 IPR003034 -
Apr3g0530 1008 ProSiteProfiles SURP motif repeat profile. 373 416 IPR000061 GO:0003723|GO:0006396
Apr3g0530 1008 Gene3D - 134 307 IPR012677 -
Apr3g0530 1008 Gene3D - 481 627 IPR008942 -
Apr3g0530 1008 Pfam CID domain 488 616 IPR006569 -
Apr3g0530 1008 SUPERFAMILY Surp module (SWAP domain) 347 428 IPR035967 GO:0003723|GO:0006396
Apr3g0530 1008 Gene3D Surp module 359 428 IPR035967 GO:0003723|GO:0006396
Apr3g0530 1008 MobiDBLite consensus disorder prediction 897 1008 - -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 730 745 - -
Apr3g0530 1008 Coils Coil 55 75 - -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 99 118 - -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 784 816 - -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 897 927 - -
Apr3g0530 1008 MobiDBLite consensus disorder prediction 49 67 - -
Apr3g0530 1008 Coils Coil 486 506 - -
Apr3g0530 1008 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 305 IPR000504 GO:0003723
Apr3g0530 1008 MobiDBLite consensus disorder prediction 730 862 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0530 221 301 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.80e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0530 K12842 - gmx:100776093 1692.17