Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0500 ATGGATCCTGGTCGCTATGCACTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTACGGTGCGGTCCACGAGCCCAATTTCCGGGTTGGTGGTTCTTACGACGAAAGGAGATTTATAGATGAAAGATATCCAAGGGATGCTGTTTACCAGAGAAATAATTTCCATCGTGACATTTTGGATAGGGAGGCCTATCTGCCTCCAGGACCTCCTGTTGGCCACTGGAGTCAATCCAAACGTAGGGGTTATGATGAAGATTATCCGCTCGACAGGGAATCTAGACGTTTTCAGAGACCTTATCATGAATCATATAATCAGATGGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGATAAGTTTCGGGATGGCTATTCCAGCATCGAAAATTACAGTGACCGAGGATATGACAAACCTGCCAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATTATGGGTACAAGTCCCGTGCTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAATTGGAGGCGACGTGAATCACGTGATCGGGAACGAGATAAGAGATGTCTTAGTCGGGAAAGAGACTTGAGTCCACATAGGAGGCATGAGCGTTCGCATTCCCACTCTCGATCACGTTCTCGATCCCGATCCCATTCCCATTCCCATTCCCGTTCACGATCCCAATCTCGTGGATATGATGATCATTCAAGATCTAGGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATCGAGAAGACAGCTATGCTGATGGTCGATATGATAAAAGTGAAAGACGTAGGGATCGTGATGATAAACGTCAGCGAGAGCATTATTCTGTGGCTCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGCCCCCTCCGTCATGTTCGCGTTATAAAGGAGAGAAATTCTGGCATCTCTCGTGGATTTGCTTTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGAAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCTGGTCCTGATGCAGCTATGAAATCAGGTCATAATCATAAGAGCATTACAGTACCATCTGATTGGATGTGCACTATATGTGGCTACATAAATTTTGCTCGCCGGACTTCCTGCTATCAGTGCAATGAGCCACGAACTGATGATGCTCCTGCAGCAGACATTTCATTATCAAATTCAGCAGCTTTAGGAAAGAAAGGTTTGGAGGCAGGTCCAACCCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCCCCAATCAAGGATCTACGACTTGTGAGAGACAAGTTTACGCATGTCTCAAGGGGATTTGCATTTGTACACTTCTATTCGGTGGAGGATGCTACCAAAGCTCTTGATGCAACAAATGGAACAACACTTGAGAAGAATGGACAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTAGGCCCTGGATCAGGAACATCAGGAACTTCCCAATCAAGCAGTCTTGCTGCTGCTGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGACAAACAGTCTACTGGTCCAGTGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCGTCGGGCTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCGTATGACCACCAAACTCAGCAGTACATACCTTGCACTGATCAAAATCAGAATAAGACATCCAATAATGAGGCTGAACCTCCTAAGGCATCTGATGGTTCCAGCAGTAAAAAGGTGGTGATTTCTGCACCAGCTACTACTGTTACATCAGCTGAGAAGCCATCTTCGTTGGCAGATGCTGTCCAGGCTGCTGCAACTGCTGCTTTAGCTGCGGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAACTGGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGGCTACTCGGGTGGCTCTGGAAGACAATCAACCATCTGTTTCAGCTGATGACAGGTCATATTCTTCTGGACATTCTGCAAAGAATAAGCTAAAAAATGAGACTACTATAAGAGAAAGTAATGCTTCAAATCTGGGAATTCACCCAACTACCCAGCTGGCTGCTATTGATTCTCAGGCACAACCACGACCTGTTAGTAATAGTCTTGGGGGAACTGTGATGGGAGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACCTACTCAGGTTCTGCATCTGTTGCCTCATCTATGTCAAGTTCATCTTCAGCAAACATTGATGCACAGACCATTGCTACTCCCTTTAAAACTGACATATCTGCCCTGGGTTCATATACACCATCTGTGGCTGTTGGAAGTGGCAGAAGAAGGTTTTCAGAAATGCCTCATTCTGGTTCAACTCACAAGGAACAACCTCAAACAACTTACAGGGATCGGGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGACTTGGCTGACCTTGAAATTGGGGATTCAAATCGAGATTTTGCATCAAGGAAAGGTGATCCAATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCATAGTTGGAGATGTCCACATTGATACTTATGAAGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTTGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCAGGCACAAGCCATGGAAAATAGAGCAGGACTTGGGAGTCAACAGAAGAAGTTGGACCCTAGCCTTGAGGTTCAGGCAGGGGATAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAAATGTCAGAGAATTAA 3192 0.448 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFIDERYPRDAVYQRNNFHRDILDREAYLPPGPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQMDGFRDREIDTYPEYDKFRDGYSSIENYSDRGYDKPARFVGHDRDDYAYDDYGYKSRASHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRCLSRERDLSPHRRHERSHSHSRSRSRSRSHSHSHSRSRSQSRGYDDHSRSRSPRGRSHGRSYREDSYADGRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDAAMKSGHNHKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSAALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDATNGTTLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGPVQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTDQNQNKTSNNEAEPPKASDGSSSKKVVISAPATTVTSAEKPSSLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSSGHSAKNKLKNETTIRESNASNLGIHPTTQLAAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVVKSDTYSGSASVASSMSSSSSANIDAQTIATPFKTDISALGSYTPSVAVGSGRRRFSEMPHSGSTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNRDFASRKGDPMPFPPGVGGGRIVGDVHIDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSEN* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0500 1063 PANTHER FI21118P1 38 212 - -
Apr3g0500 1063 PANTHER FI21118P1 217 1060 - -
Apr3g0500 1063 Gene3D - 408 440 - -
Apr3g0500 1063 MobiDBLite consensus disorder prediction 227 249 - -
Apr3g0500 1063 SUPERFAMILY Ran binding protein zinc finger-like 404 440 IPR036443 -
Apr3g0500 1063 MobiDBLite consensus disorder prediction 893 915 - -
Apr3g0500 1063 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 388 IPR000504 GO:0003723
Apr3g0500 1063 SMART rrm1_1 466 541 IPR000504 GO:0003723
Apr3g0500 1063 SMART rrm1_1 309 384 IPR000504 GO:0003723
Apr3g0500 1063 ProSiteProfiles Zinc finger RanBP2 type profile. 410 439 IPR001876 -
Apr3g0500 1063 SMART zf_4 412 436 IPR001876 -
Apr3g0500 1063 Gene3D - 451 571 IPR012677 -
Apr3g0500 1063 Gene3D - 274 407 IPR012677 -
Apr3g0500 1063 MobiDBLite consensus disorder prediction 90 109 - -
Apr3g0500 1063 CDD OCRE_SUA_like 604 656 IPR035623 -
Apr3g0500 1063 ProSitePatterns Zinc finger RanBP2-type signature. 414 433 IPR001876 -
Apr3g0500 1063 ProSiteProfiles G-patch domain profile. 985 1031 IPR000467 GO:0003676
Apr3g0500 1063 SUPERFAMILY RNA-binding domain, RBD 234 386 IPR035979 GO:0003676
Apr3g0500 1063 MobiDBLite consensus disorder prediction 754 800 - -
Apr3g0500 1063 MobiDBLite consensus disorder prediction 138 226 - -
Apr3g0500 1063 SMART G-patch_5 983 1029 IPR000467 GO:0003676
Apr3g0500 1063 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 545 IPR000504 GO:0003723
Apr3g0500 1063 MobiDBLite consensus disorder prediction 130 305 - -
Apr3g0500 1063 CDD RRM1_RRM2_RBM5_like 306 386 - -
Apr3g0500 1063 SUPERFAMILY RNA-binding domain, RBD 463 552 IPR035979 GO:0003676
Apr3g0500 1063 Pfam OCRE domain 607 655 IPR041591 -
Apr3g0500 1063 PANTHER RNA-BINDING PROTEIN 217 1060 - -
Apr3g0500 1063 PANTHER RNA-BINDING PROTEIN 38 212 - -
Apr3g0500 1063 MobiDBLite consensus disorder prediction 250 302 - -
Apr3g0500 1063 MobiDBLite consensus disorder prediction 657 682 - -
Apr3g0500 1063 CDD RRM1_RRM2_RBM5_like 463 543 - -
Apr3g0500 1063 MobiDBLite consensus disorder prediction 583 602 - -
Apr3g0500 1063 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 533 IPR000504 GO:0003723
Apr3g0500 1063 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 369 IPR000504 GO:0003723
Apr3g0500 1063 Pfam G-patch domain 986 1027 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0500 Apr-Chr3 10486722 10495495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0500 307 529 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.12e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0500 K13094 - gmx:100787998 1767.67