Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0499 ATGAAGAAGGGTCCTGGTGCTGGTGTTAGTGCAGGTCTTGACAACAATGAGCATCATTCTTGGATGTGCCATATCTGCAACAAAGGTTTCAGCTCAGGTAAAGCACTGGGAGGACACATGAGGATACACAACATCTCTAGAAAGCAAGTTCATAAGGCCAAACAAGGCACTACTAGTGCTGCAAAAACCAAAGCCAAGACATGGGTCTTGATGAGTGGCAACCCCACTTGTTACCTTTGCAGAAAGAGCTTCTCTTCCATGAAGTCCTTATTTGCACACATGCGTTCTCACCCTCAAAGGTTGAGGAAGGTTTTTCAACCTCACAATAACACCCCTAAGAATGTTGCATCCTCCAATTCCACATCTTCCTCAACTCTATCTGATGATTCTGCTGTTGATCTCTCTCAAGCTTTGTGGGGTTGGTCTGTGACTGCCAAGAGAGGCCGCAGAAGCCTCTCTTGTGGCACTGTAAATTCCGGCTTAGAGCATCATGGGATTGAACAACGTATGCAAGAGGCAGTGTATGAGCTCATGTTGCTGGCAAGTGGGAACCCCAAGAGGGGGGAAAAGGTGGCTGGTGATAATAAGGTTGAGCTTTCACCAGTTTCACTCAGCAAGAAACTCAAGGTTGAAGCCAAGTCATTGAACAAGATGGGTTTTGAAGAAGAGTTGTTAAAGTCAAGCTTTGGAAATTGTGATGGCAGCACTGATATGAAGAACAAGAACAGGAAAAGGAAGAGAGAGACAAAGAGAATGGAATTAACTGAACTGAAAACAGCTGAGGAGGACAAGAAGTTGGTTAGAAGCAGAATAAGCAATGCAACTTTCCCAAGTAACATTGCTTTGGAGGGTCATCTATCCAACCATAAAAATTCCAAGAACATTCAAATCATGGATGAATTGGAAACAGATGGTGTGTCAGCCACAGAGGAAGAGGAGGAGACAGCTATGCAAGTGGATGAAACAGGAACTGCTGTTGGGTGTTGTACTGTGGAATCCATGACGGGGCATCAGTGTAAAATTTTCAACAAGACTTTATCAATGGGTCAAGTCTCTGGGGACCACAAAAGATCTCATTGGACTGGCATGGCAGAAGCTCATTCAGCTCAAGCAACTTCACCTGTGGAAGATGGTCAGAATTGTTCAAATATTTTGAGTTTTGATCTTAATCAGTATCCAGCTATGGATGACGAAGTGGGTGTTCAATCAGACTTGTCTATTCCTTCCAATATTATGACATCATCCAGTTATGGTTCCTCTTCCCAAAATTCCTACTAA 1278 0.4366 MKKGPGAGVSAGLDNNEHHSWMCHICNKGFSSGKALGGHMRIHNISRKQVHKAKQGTTSAAKTKAKTWVLMSGNPTCYLCRKSFSSMKSLFAHMRSHPQRLRKVFQPHNNTPKNVASSNSTSSSTLSDDSAVDLSQALWGWSVTAKRGRRSLSCGTVNSGLEHHGIEQRMQEAVYELMLLASGNPKRGEKVAGDNKVELSPVSLSKKLKVEAKSLNKMGFEEELLKSSFGNCDGSTDMKNKNRKRKRETKRMELTELKTAEEDKKLVRSRISNATFPSNIALEGHLSNHKNSKNIQIMDELETDGVSATEEEEETAMQVDETGTAVGCCTVESMTGHQCKIFNKTLSMGQVSGDHKRSHWTGMAEAHSAQATSPVEDGQNCSNILSFDLNQYPAMDDEVGVQSDLSIPSNIMTSSSYGSSSQNSY* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0499 425 Coils Coil 238 258 - -
Apr3g0499 425 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Apr3g0499 425 SUPERFAMILY beta-beta-alpha zinc fingers 21 97 IPR036236 -
Apr3g0499 425 MobiDBLite consensus disorder prediction 107 127 - -
Apr3g0499 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Apr3g0499 425 Gene3D Classic Zinc Finger 18 97 - -
Apr3g0499 425 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Apr3g0499 425 SMART c2h2final6 21 43 IPR013087 -
Apr3g0499 425 SMART c2h2final6 75 97 IPR013087 -
Apr3g0499 425 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 336 398 - -
Apr3g0499 425 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 16 320 - -
Apr3g0499 425 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 336 398 IPR044653 GO:0003700
Apr3g0499 425 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 16 320 IPR044653 GO:0003700
Apr3g0499 425 Pfam C2H2-type zinc finger 77 99 - -
Apr3g0499 425 Pfam C2H2-type zinc finger 23 43 - -
Apr3g0499 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 48 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0499 22 107 C2H2 Transcription Factor Family AT2G26940 37.037 2.92e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g0499 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0499 - - aprc:113859226 791.186