LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g0498	ATGGATGGGGTTAGACCTCGTGATAAAGCGGAGCAGCCTCAGTCCAGAGACTTCGCCACCGCGTCGTCATCGTCGTCGGGATGGCGTCCCCGAGGGTTTGCGTTCGTTCCTTGTGTGCCTAAGGGTGAAGGAGAAGGAGAAGAAGTTACTGCTGCTCAGAAGTCGCAACCGTTGCGCCTCGTTGTGAGGAAACCTTTGGTGGCTAGATTGACCAAGGAAATAGTGGAAACATACCAAATCTGCAATCCACAGTTTAAATATTCTGAAGATCTAAATCCAAAAAGATTTTTGACTAGTCCATCCGTTGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATTCTGACAGTGAATTTTGTCTTGATCCATTTAGAGAAAAATAAAAGATATATTGTCAAAGATGTCCTTGGTCATGGGACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCAGCATACTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACACTTGTGCATTTGCTTTGAATTGCTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTATTCTCTAAGCAGATTTTATGTGGACTGGCTCTTTTAAAAGAGGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACAAGCACTGTGAAGCCAGCAGAAATCAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACGGTTTACTCTTATATTCAGAGTCGATACTATAGATCACCTGAGGTTCTTCTTGGATATCAATACTCAACAGCTATAGATATGTGGTCCTTTGGGTGCATAGTGGCAGAATTGTTTCTTGGATTACCATTATTCCCTGGGGCTTCAGAATTTGATCTTTTGAAACGGATGATTGAAATACTTGGAGGACAACCACCTGATTATGTATTAAGGGATGCCAAAAACACAAGTAAATTCTTTAAGTGTATTGGGAGTCTCCAGAACATAGAGAACAGCGAGAGTTCCAAAAATGGAAGAAGTGTTTATCAAGCATTGACAGTGGAAGAATATGAAGCTCGAGAAATGAAGAAGCCATCAATTGGAAAAGAGTATTTTCATCATATGAATCTTGAAGCAATTGTTACAAACTATCCGTACAGAAAAAACCTACCCAAAGAAGATATTGTCAAAGAAAGTCAAGCACGACTGGCTCTTATTGATTTTTTAAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCATTTCAGGCTTCAAAACACCCTTTTGTAACTGGGGAACCTTTTACACACCCCTACAAGCCTCCCCCTGAGACTCCTCACATGCCTGTAGTTCAAAATATCAAGGTGGATAATCATCCAGGCGGCGGACACTGGTTTGCTGCTGGTCTATCACCTAATGTTCAAGGAAAGAGCAGAGCTTCCCTCTATAGCAGTCCACATTTTCAGATGGTTCAACATCCATCTAATAGTTATGGAAGTGTAGGAAGCCATGGGAGCTATAATGACAGTGCTGGGCTTGGAAGCAGCTATGGGAGTTATGGAGAGAGCAGTAACATGTTTGCTTATTATTCACCAATTGCTCCATCTGGTATGAACATGCATAATCAGGGCAATATGTCAATGCTTGGAAATAGTCCTGATGCTAGGAGGAGAGTTAAGTACCAACCTGGGAATGGGCTGGGCGTAAGTCCATCAGCTGGAAATTTTGCTCCTCTGCCTCTTGGTGCCAGCCCATCTCAATTTACTCCACCAAGTTCCTATAGTCAGGTTTCAGTTGGTTCTCCAGGACACTATGGACCTACATCTCCTGCAAGAGGAACTTCTCATGGATCACCTTTAGGCAAGACATCTGCAGTTAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAACTCAAGAAACTACATTTTGTTCACATTGGCAAGGCCAATATCCTGACAGCACTAGCCATACTGAGGGAACATCACAAGCTCTTGGCAGTTCACCATCATATCTACAGTCAAATAGCAATCCTGGAAACTGGAAGCAGCGAGGTAGTGGAGGGTTATCAGCAAATCAGAACATTTCATGCTTGGTTATGCCCAGTTGTAGCATGAACTCACAATCAACAGAATTGGTTCGTGACAATGTGGACACAGGCATTTCATTGCCTGATCCTGGAGATTGGGACCCTAATTATAGTGATGAACTACTACTACAAGATGATGGTTCAGATGAAAGCAATTTGACAACTGAGTTTGGTAGAAGTATGAATCTTGGTTCCACTGAACCATGGGCTGGATTTGGAAGGTTCAACCATGTCTCCAGCTCAAACACTCCAATAATCATGCAAAGACTCAGTGGACCAGGTCAAGCATTTTCTAACGTTGAGGTGGGTAGCCTTCCAGCTCATGATCATCAAGCAGCATACTCTATGTCTAAGCCTTTTCATCTCATGCCTCATATTTTACAAAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATTCACACATGGTAGACCACCCCAGGGTGCTGAGTGGAATCAAATTAAGATTCAGGCTCCTTCTGGTTTCAGCAATGTGGGCCCTCGTTCTCCCAGGAACAACTCATTCACAAACAGTATGACATGGGGGCGAAGAATGAATCCTCCTGTCGCAAGCATGCCACCAACATCTCGGACAAGAAAAGATTACGCAAGGATAGACTAG	2868	0.4212	MDGVRPRDKAEQPQSRDFATASSSSSGWRPRGFAFVPCVPKGEGEGEEVTAAQKSQPLRLVVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSVGVLNDGYDNVNSDLILTVNFVLIHLEKNKRYIVKDVLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKEAGIIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYSTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEILGGQPPDYVLRDAKNTSKFFKCIGSLQNIENSESSKNGRSVYQALTVEEYEAREMKKPSIGKEYFHHMNLEAIVTNYPYRKNLPKEDIVKESQARLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTHPYKPPPETPHMPVVQNIKVDNHPGGGHWFAAGLSPNVQGKSRASLYSSPHFQMVQHPSNSYGSVGSHGSYNDSAGLGSSYGSYGESSNMFAYYSPIAPSGMNMHNQGNMSMLGNSPDARRRVKYQPGNGLGVSPSAGNFAPLPLGASPSQFTPPSSYSQVSVGSPGHYGPTSPARGTSHGSPLGKTSAVSQFNRRKNWGHSGSPQTQETTFCSHWQGQYPDSTSHTEGTSQALGSSPSYLQSNSNPGNWKQRGSGGLSANQNISCLVMPSCSMNSQSTELVRDNVDTGISLPDPGDWDPNYSDELLLQDDGSDESNLTTEFGRSMNLGSTEPWAGFGRFNHVSSSNTPIIMQRLSGPGQAFSNVEVGSLPAHDHQAAYSMSKPFHLMPHILQNSPSRFGHQSVQRFTHGRPPQGAEWNQIKIQAPSGFSNVGPRSPRNNSFTNSMTWGRRMNPPVASMPPTSRTRKDYARID*	956

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g0498	955	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	256	268	IPR008271	GO:0004672\|GO:0006468
	Apr3g0498	955	PANTHER	BNAC04G29850D PROTEIN	53	749	-	-
	Apr3g0498	955	CDD	PKc_YAK1	133	476	-	-
	Apr3g0498	955	SMART	serkin_6	133	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr3g0498	955	ProSitePatterns	Protein kinases ATP-binding region signature.	139	162	IPR017441	GO:0005524
	Apr3g0498	955	Gene3D	Phosphorylase Kinase; domain 1	98	213	-	-
	Apr3g0498	955	MobiDBLite	consensus disorder prediction	908	933	-	-
	Apr3g0498	955	ProSiteProfiles	Protein kinase domain profile.	133	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr3g0498	955	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	53	749	-	-
	Apr3g0498	955	Pfam	Protein kinase domain	134	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr3g0498	955	SUPERFAMILY	Protein kinase-like (PK-like)	127	499	IPR011009	-
	Apr3g0498	955	MobiDBLite	consensus disorder prediction	698	739	-	-
	Apr3g0498	955	MobiDBLite	consensus disorder prediction	1	31	-	-
	Apr3g0498	955	MobiDBLite	consensus disorder prediction	15	29	-	-
	Apr3g0498	955	MobiDBLite	consensus disorder prediction	908	955	-	-
	Apr3g0498	955	Gene3D	Transferase(Phosphotransferase) domain 1	214	477	-	-
	Apr3g0498	955	MobiDBLite	consensus disorder prediction	590	670	-	-
	Apr3g0498	955	MobiDBLite	consensus disorder prediction	632	649	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g0498	Apr-Chr3	10407588	10436985	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr3g0498	132	362	MAP Kinase Gene Family	AT3G18040	33.740	2.68e-31	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Apr3g0498		Pkinase	9.7e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g0498	K18670		-	gmx:100792777	1765.36