Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0488 ATGTTTACATGCATAGCTTGTACGAAGCAAACCAGCGATGAGAGGGATGAAGGAGGAGCTCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCCGTCAAAAGCCTGACAACTCAGATAAAAGACATGGCACTAAAGTTCTCAGGTGCTTACAAGCAATGCAAACCATGCACAGGGTCCAGTAGCTACAAGAAAGGACATAGACCATATCCAGACTTTGATACAATTTCAGAAGGGGTTCCATACCCTTATATTGGAGGTGCAAGTTCAAGTTCAACCCCTGCATGGGACTTCACAACCTCTAACTACCCTGGTGGTAGATCTGACCCAAGATTTACTGGGGCATTTGGCGGGGACCGTACCCCTAGAGGACGTGACTCAGCATCAGTCTGTGATGTGGTGTTAGAGGACGAGGATGAGCCTAAGGAGTGGATGGCACAAGTGGAGCCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGGGGAAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATGTTTAATAAATGGCAAGCTCAAAGATGGTGGGGTGAGAATTACGACAGAATCATGGAGCTTTATAACGTTCAGAGGTTTAATCGACAAGCGCTTAACACACCTCCACAATCTGAGGATGAGCCAAGAGATTCTTCTTACACAAGATTGACTTCTGCAAGAGAAAGCCCTATGGCCTCGAACAAGGATTGGACACCGAGGAGTCACTATAAACCGTCTGGGAGCAGAGGATATTACCCGTCTGAAGCGATGGATGAGGGTGGTGGTGGACAGCACTTCAATGCAGGGTCGTCAATGGAACCAGGAAGAGCCACCACTGCTTCAAGGGACGAGCCTTCTATTAGCAATGCCAGTGAAATGGAGACAGAATGGGTAGAACAAGATGAGCCTGGAGTTTACATTACCATCAGGCAGTTAGCTGATGGGACAAGGGAGCTTCGTCGTGTCAGATTCAGCCGAGAAAGATTTGGGGAGGTGAATGCGAAAACATGGTGGGAAGAGAACAGAGAGAGAATACAAGCTCAATACCTTTGA 1053 0.4767 MFTCIACTKQTSDERDEGGARESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSNYPGGRSDPRFTGAFGGDRTPRGRDSASVCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPQSEDEPRDSSYTRLTSARESPMASNKDWTPRSHYKPSGSRGYYPSEAMDEGGGGQHFNAGSSMEPGRATTASRDEPSISNASEMETEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0488 350 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 350 - -
Apr3g0488 350 MobiDBLite consensus disorder prediction 101 126 - -
Apr3g0488 350 ProSiteProfiles BRX domain profile. 141 196 IPR013591 -
Apr3g0488 350 ProSiteProfiles BRX domain profile. 295 350 IPR013591 -
Apr3g0488 350 MobiDBLite consensus disorder prediction 13 32 - -
Apr3g0488 350 MobiDBLite consensus disorder prediction 222 241 - -
Apr3g0488 350 Pfam Transcription factor BRX N-terminal domain 22 56 IPR027988 -
Apr3g0488 350 Pfam Transcription factor regulating root and shoot growth via Pin3 294 349 IPR013591 -
Apr3g0488 350 Pfam Transcription factor regulating root and shoot growth via Pin3 141 195 IPR013591 -
Apr3g0488 350 MobiDBLite consensus disorder prediction 271 289 - -
Apr3g0488 350 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 350 IPR044532 -
Apr3g0488 350 MobiDBLite consensus disorder prediction 205 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0488 Apr-Chr3 10127483 10131832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0488 1 350 Major Intrinsic Protein MIP AT1G31880 68.169 1.72e-168 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0488 - - ccaj:109789470 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0488 3 10127483 10131832 Apr3g0488 3 10127483 10131832 ECH