Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0486 ATGGAGAAAACAAGGTCCTCGGAGCAAGTTGTTGTCTTCCTCGACCAACACAATCCTAAAGCTTCTTCGATGGACGCCGAGAATCCCCAAACTAATGAGAAGCCCAAACACCCCCCGATGAGAGCCCAAACTCTCAACTGTCTCAGCTTCTCAAAACCCAAATCCCGAATCCTAGAATACAACTATCCTCCACGCACCAAGCTACTAACCCCCGAAGAAATCGACACCATTCAACCTTCCTATAAGATCTCTTCCGACGACGACGACGATTGGGATTGGAGCGAAGATGAGCAAGAAGAAGATGACTCACAACACGACCCCAAGTTACACCCGAAGAGAAAGTTCAAAGTCAAGTGGAGGCTCATGATGGAATGGGCCTTGTTTCTCAACATAATGGCCTGTTTGGTGTGTTCTCTTACCATATCTTCCATTACAAACATTCACGTGTGGGGTTTGGAAATTTGGAAGTGGTGTTTAATGGCAATGGTCACTTTCAGTGGCCGTTTGTTTTCGGGATGGTTAGTTGGCCTAACGGTTTTCATCATCGAACGAAACTTCATGCTGAGGGAGAAGGTCTTGTACTTCATCTACGGACTCAGAAAAAGCATAAGAAACTGTTTGTGGTTAGGCCTTGTTTTAATCTCTTACTGGAGTCTGGTGTTCGATGATGTCCAAAAGAAGAACCACAAGTTCCTCAACAAGGTGTTTCAAGCCTTGGTGGCTGTTTTAGTGGGTGCTACCATTTGGCTTATAAAGATTGTGTTAGTCAAAATACTGGCAAGTTCATTCCACGTGACCACTTACTTTGATAGAATGAAAGAGAGCGTTTTTCATCACTACATTTTGGACACCTTGTCAGGGCCTCCAATGGAAGATGCTGAAGCGATATTGCAACAGCACCAACTCAATGGCTCTAAGTCGATGCCCACGAGGGGGAAGTTGAAGGAGGCAAAGAATCAGCACAAGTCTAAGAGGTTTGGCTCGAGGAAGATTGACATGGAGAAGCTGAGAGAGCTTAGCATGGAGAGCACTGCTTCTGCATGGAGTGTGAAGAGGCTTGTTAGCTATGTTAGATCTTCCGGTTTGTCCACCATTTCAAGGACTGTTGATGATTTTGGGAACGCCGAGTCTGAGATCAGTAGCGAGTGGGAAGCTAGAAATTGTGCACAGAAGATTTTCAAGAACGTTGCTAAGCCTGATGCCAAGTATATTGAAGAGGAGGATCTCATGAGATTTTTGAAGAGGGTTGAGATACATACCATTTTTCCACTCTTTGAAGGCGCCCTTGAAACTGGCAAGATCAGCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACCAAAACAGCAGTACAGCAGCTTCACAAATTAGCAAGCGCCATTGTTAGTGTGATAATAATCATTGTGACCATTTTGGTGATGGGGGTGGCAACGGTCAAGATAATATTATTCTGCATTACACAAACTGTTTTGATAGGAGTTGCCTTCCAAGGTACTTGCAAGACTGTATTGGAGGCCATCGTCTTTGTCTTCGTCATGCACCCTTTTGATATTGGAGACCGCTGTGTCATTGATGGAGTTCAGATGATTGTGGAAGAGATGAATATCCTGACAACAGTATTTCTTCGATATGACAATGAGAAAGTATACTACCCTAACGCAGTTTTGCTCTCTAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTCACAATTGATGTTTCAACTCCCATGGAGACCATCCTTGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAACACGGTATGATAGCAAAAGGAATAGAAAATGTGGACAAGTTGAAGTTGTGCTTATCTGTGCAACATACCATCAACCATCAGAACTACGGTGAGCGAAACGTTAGGATAACGGAACTTTTCTTGGAATTGAAAAGGCTCTTTGAGATCCATGGTGTCAAGTATCATCTTCTTCCTCAGGAGATCCAAATTACCCAGATGAACATTGAAAATGGGAAAGTCCTTTTTCAATCATAA 2097 0.4297 MEKTRSSEQVVVFLDQHNPKASSMDAENPQTNEKPKHPPMRAQTLNCLSFSKPKSRILEYNYPPRTKLLTPEEIDTIQPSYKISSDDDDDWDWSEDEQEEDDSQHDPKLHPKRKFKVKWRLMMEWALFLNIMACLVCSLTISSITNIHVWGLEIWKWCLMAMVTFSGRLFSGWLVGLTVFIIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLISYWSLVFDDVQKKNHKFLNKVFQALVAVLVGATIWLIKIVLVKILASSFHVTTYFDRMKESVFHHYILDTLSGPPMEDAEAILQQHQLNGSKSMPTRGKLKEAKNQHKSKRFGSRKIDMEKLRELSMESTASAWSVKRLVSYVRSSGLSTISRTVDDFGNAESEISSEWEARNCAQKIFKNVAKPDAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVTILVMGVATVKIILFCITQTVLIGVAFQGTCKTVLEAIVFVFVMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKVYYPNAVLLSKPISNFYRSPEMWDSIDFTIDVSTPMETILALKKSIQMYIESKPKYWNPKHGMIAKGIENVDKLKLCLSVQHTINHQNYGERNVRITELFLELKRLFEIHGVKYHLLPQEIQITQMNIENGKVLFQS* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0486 698 PIRSF Memb_At2g17000 2 695 IPR016688 -
Apr3g0486 698 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 696 IPR016688 -
Apr3g0486 698 MobiDBLite consensus disorder prediction 1 43 - -
Apr3g0486 698 Pfam Mechanosensitive ion channel 469 674 IPR006685 GO:0016020|GO:0055085
Apr3g0486 698 SUPERFAMILY Sm-like ribonucleoproteins 519 577 IPR010920 -
Apr3g0486 698 MobiDBLite consensus disorder prediction 79 107 - -
Apr3g0486 698 MobiDBLite consensus disorder prediction 88 102 - -
Apr3g0486 698 Gene3D - 528 577 IPR023408 -
Apr3g0486 698 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0486 Apr-Chr3 10083901 10089704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0486 7 688 Mechanosensitive Ion Channel Family AT5G12080 43.236 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0486 K22048 - gmx:100813521 1151.73