Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0480 ATGGAGTCCGGGGAGAACGAGCGCGTGACGGTTCGTGAGTTCTGCGCGAATGGGAGTTGCGTAAAAGCAACAGAAGTTGAGGCCAAGCTCGATGAAGGAAACATTCAAGAAGCTGAAGCAGCGTTACGTGAAGGGTTGTCAATCAATTCTGAGGAAGCAAGGGCTCTTCTTGGAAAGTTAGAGTATCAGAGAGGCAATGTCGAAGGCGCTCTTCGTGTTTTTGATGGAATTGATCTTCAAGCAGCCATACAGCGACTGCAATCTTCCCTTTCTGAAAAGCCACCTGTTAAGAAAGGTCCAACTCGCTCTGAATCACCTTCCTCAGTCTCGCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTCCAAAAACTCAGAAAATTTACGGAAGCTGCTACTGAATGCAAGCGTGTTCTTGATGCTGTTGAGAAGATATTTTGTGAGGGTATACCTGATACACAAGTAGACAATAAATTGCAGGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAACTTTGGAAACAGGCTGGTTGCTATAATGAGGCGCTGTCTGCCTATAGGAATGCCCTCCTTAGTCAATGGAACCTTGATAATGAATGTTGTGCGAGAATTCAAAAGGCATTTGCTGTGTTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCCCCCACTTTAGCTGTTCAGATTGAAGGGTCTTATGTACCCAAAAATAATCTGGAAGAGGCAATTCTTCTTCTAATGATTGTTTTGAGAAAGTTTAGCCTTGGTAAGACTAAGTGGGATCCTTCAATTATGGAACACCTGACATTTGCACTTTCAGCATGTGGTCAGACTTCTATTTTAGGAAAGCAATTTGAAGAGTTGATGCCTGGGGTATATCACCGTATTGACCGTTGGAATTCTTTAGCTCTATGTCATAGTGGAGCTGGAGAAAATAAAACTGCTTTGAATCTACTAAGGATGGCTTTGCATAAACATGAACGACCAAATGACCTTGTATCATTGTTATTTGCTGCCAGGATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGAGCAGGCTATGCACAGAGGGCAATTGATAATGCTCTGGGCATAGATGATCATTTGAAAGGCGTGGGTCTTCGCATGCTGGGACTTTGCCTAGGAAAGCAAGCTAATGTTGCTTCCTCCGACTTTGAGAGATCAATGCTTCAATCCAAAGCCCTGCAATCATTGGACGAGGCAGTTAGACTGGAGCAGAACAATTCTGATCTTATTTTTGAATTGGCTATTCAATATGCTAAGCACCGAAATTTGACTACTGCTTTACGGTATGCCAAACAGTTTTTTGACAGAACTGGTGGCTCTAAAGTGAAAGGTTGGAGATTGCTTGCTCTAGTTTTGTCTGCACAGAAAAGGTATTCGGAAGCTGAAGTGGTGACTGATGCTGCTTTGGATGAGACTGCAAAATGGGAGCAGGGGATATTGTTGAAGCTGAAAGCCCAGCTAAAGTTCATCCAATTACGACCCATGGATGCTATTGAAATTTATCGGTACCTTCTTGCATTGGTTCAAGCTGAGAAGAAATCATTTGGGTCTCTCAAACATAGTTCACAGGTTGATGATGATAAAATAAATGAATATGATGTTTGGCATGGTCTGGCAAATTTATATGTCAGCCTTTCTCATTGGAAGGATGCCGAAATCTGTTTACAGAAGGCCACAGAGTTGCAGGAATACTCAGCACCAACAATACACACAGAAGCTGTCATACTGGAAGGTCGGGGACAAAATCAAGAAGCGCTTGCTGCTACTGCCAATGCTGTTCTATTTGGACCAAACTATGTGCAAAGCAAGAACTTGATGGCTAATTTGATGCTGAAAATGAGTTCTAAAGCTTTGCCTGTTGCTAGAAGCTTACTTTCAGATGCACTTAGAATCGAACCCACTAACCACCTGTCTTGGTTTTACCTGGGATTAACTCACAAGGATGACGGCCGAGTAGGTGATGCTGCTGATTGCTTCCAGGCAGCCTTCATGCTTCAAGAATCCGATCCCATTGAAAATTTCAGCAGTTTGCTTTGA 2085 0.436 MESGENERVTVREFCANGSCVKATEVEAKLDEGNIQEAEAALREGLSINSEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQSSLSEKPPVKKGPTRSESPSSVSQHAASLVLEAIYLKAKSLQKLRKFTEAATECKRVLDAVEKIFCEGIPDTQVDNKLQEIVSHAVELLPELWKQAGCYNEALSAYRNALLSQWNLDNECCARIQKAFAVFLLYSGVEASPPTLAVQIEGSYVPKNNLEEAILLLMIVLRKFSLGKTKWDPSIMEHLTFALSACGQTSILGKQFEELMPGVYHRIDRWNSLALCHSGAGENKTALNLLRMALHKHERPNDLVSLLFAARICSEDPHLAAEGAGYAQRAIDNALGIDDHLKGVGLRMLGLCLGKQANVASSDFERSMLQSKALQSLDEAVRLEQNNSDLIFELAIQYAKHRNLTTALRYAKQFFDRTGGSKVKGWRLLALVLSAQKRYSEAEVVTDAALDETAKWEQGILLKLKAQLKFIQLRPMDAIEIYRYLLALVQAEKKSFGSLKHSSQVDDDKINEYDVWHGLANLYVSLSHWKDAEICLQKATELQEYSAPTIHTEAVILEGRGQNQEALAATANAVLFGPNYVQSKNLMANLMLKMSSKALPVARSLLSDALRIEPTNHLSWFYLGLTHKDDGRVGDAADCFQAAFMLQESDPIENFSSLL* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0480 694 PANTHER PROTEIN NPG1 1 693 IPR043376 -
Apr3g0480 694 Gene3D Tetratricopeptide repeat domain 238 528 IPR011990 GO:0005515
Apr3g0480 694 Gene3D Tetratricopeptide repeat domain 26 223 IPR011990 GO:0005515
Apr3g0480 694 SUPERFAMILY TPR-like 406 504 IPR011990 GO:0005515
Apr3g0480 694 PANTHER CALMODULIN-BINDING PROTEIN 1 693 - -
Apr3g0480 694 SUPERFAMILY TPR-like 496 683 IPR011990 GO:0005515
Apr3g0480 694 MobiDBLite consensus disorder prediction 90 109 - -
Apr3g0480 694 SUPERFAMILY TPR-like 118 444 IPR011990 GO:0005515
Apr3g0480 694 Pfam Tetratricopeptide repeat 428 484 - -
Apr3g0480 694 Pfam Tetratricopeptide repeat 28 75 - -
Apr3g0480 694 Gene3D Tetratricopeptide repeat domain 529 630 IPR011990 GO:0005515
Apr3g0480 694 Gene3D Tetratricopeptide repeat domain 631 692 IPR011990 GO:0005515
Apr3g0480 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Apr3g0480 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Apr3g0480 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Apr3g0480 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Apr3g0480 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Apr3g0480 694 SMART tpr_5 458 491 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0480 Apr-Chr3 9934155 9940327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0480 2 694 Calmodulin-binding Proteins AT2G43040 69.440 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0480 K21843 - gmx:100811897 1170.22