Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0478 ATGGTTAAGCATAATAATGTGATCCCCAATGGGCACTTCCGGAAGCATTGGCAAAACTATGTCAAGACTTGGTTCAATCAACCAGCACGGAAGACAAGAAGACGGTTGGCCCGGCAGAAGAAGGCTGTTAAGATTTTTCCCAGGCCTACAGCTGGTCCCCTTAGACCAATTGTTCATGGTCAAACTCTGAAATATAACATGAAAGTCAGAGCTGGAAGAGGATTTTCTCTTGAAGAACTGAAGGCTGCTGGTATTCCCAAGAAGCTTGCCCCAACTATTGGCATTGCTGTTGATCATCGCCGCAAGAATCGATCTTTGGAGAGTCTGCAAGCTAATGTGCAGAGGCTGAAAACATACAAGGCCAAGTTGGTTGTGTTCCCCAGGCGGGCACACAAGGTCAAGGCTGGTGATTCTAGCCCTGAAGAACTAGTAAATGCCACCCAAGTTCAGGGTCCATTCTTGCCCATTGTGAGGGAGAAACCAGCTGTTGATCTTGTTAAGGTTACAGATGAAATGAAGGCATTTAAAGCTTATTATAAGCTTCGTCTTGAACGTACAAACCAACGCCATTATGGTGCCAGACTAAAGAAGGCTGCTGAAGCGGAAAAGGAAGACAAGAAATGA 624 0.4567 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKAKLVVFPRRAHKVKAGDSSPEELVNATQVQGPFLPIVREKPAVDLVKVTDEMKAFKAYYKLRLERTNQRHYGARLKKAAEAEKEDKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0478 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Apr3g0478 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Apr3g0478 207 Gene3D - 167 207 - -
Apr3g0478 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Apr3g0478 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Apr3g0478 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0478 Apr-Chr3 9913462 9916196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0478 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.340 2.92e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0478 K02873 - gmx:100499935 380.948