Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0477 ATGGAGGATAATGATCAGACATTGTTCACTGGCAAAGATGATGCCGTAGTGAATGGCTTGGCTGCACTTAGCTGTGTGGTGGCTATGATCACAATGTACCGTCTCATAAAAATGCTTTGCTGCAGCAAGCATTATAATATCAGAGACTACCAAAACATATTGGCACAGGCACAGGCACAGTCCGCAGCTAGGGCACTTGCACAAGCGGTGAGCATGGAAGAGAGAATTGCGGTGTCGCACCTGATTCCAACCCACAAGTATGAGAAGAAGAAGAACGATGATGATGACGTGGCAGATGGTGATGAAAATGACACGTGTGCTGTGTGTTTAGGAGACTTCGAAGAGGGTGAAGAGTTGAGGACGCTGCCGGAGTGCCTGCACTCTTTCCACGTGCAATGCATAGATAAGTGGCTCCATCACCATTCCAATTGCCCTATTTGTCGTGCTCCTGTAACACCTTCATCGGCGATGCTCCACCGTTCGCCGGAGTTTGGCTCCGGTAAACTCTTACAAAATCCATCCCCAAGTCCTCCAGAACCTCCAATTCCAACCAAACCATATCATCACCATGGTAATGGCCTTGACATTCAGTATGGATTCCTGTAA 606 0.4802 MEDNDQTLFTGKDDAVVNGLAALSCVVAMITMYRLIKMLCCSKHYNIRDYQNILAQAQAQSAARALAQAVSMEERIAVSHLIPTHKYEKKKNDDDDVADGDENDTCAVCLGDFEEGEELRTLPECLHSFHVQCIDKWLHHHSNCPICRAPVTPSSAMLHRSPEFGSGKLLQNPSPSPPEPPIPTKPYHHHGNGLDIQYGFL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0477 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 155 IPR013083 -
Apr3g0477 201 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 16 157 - -
Apr3g0477 201 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 16 157 IPR044675 -
Apr3g0477 201 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Apr3g0477 201 Pfam Ring finger domain 104 148 IPR001841 -
Apr3g0477 201 SUPERFAMILY RING/U-box 86 154 - -
Apr3g0477 201 CDD RING-H2_PA-TM-RING 105 148 - -
Apr3g0477 201 SMART ring_2 106 147 IPR001841 -
Apr3g0477 201 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0477 Apr-Chr3 9907667 9909684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0477 20 152 C3H Transcription Factor Family AT5G17600 34.307 1.19e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0477 - - aprc:113859427 385.185