Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0476 ATGGATGATCACCAATCTCTGTTCACTGGCAAAGTAAGTGCCATACTAATAGCCATGGGCACTGCTAGCTTTGTGCTCACAATCTACCATCTCATAATCCTTTGCCGCAACCAACACCCTCACGCCACAAACCACAACTCCTCCCAACAAGAAAGGTCCATAACTGCGCCATCACCGTCAGCGCCGTCGCGGAGCAGGGAACAGAGTGCATCTCTGTCGCACCTGATTCCAGCCCACAAGTACGTAAAGAAGAAGAAAAATGACGATGACGTGGCAGATGGTGACGGTGATGAGGACGACGCGTGTGCAGTGTGTTTGGGAGACTTTGAGGAGGGTGAAGAGTTGAGGACTTTGCCCGAGTGTATGCACTCTTTCCACGTGCCATGCATCGACACGTGGCTCCATTCCCATTCCAGTTGTCCCGTTTGTCGCCTCGATGCCACGCCTTCGCCGGCGGTGATCCACCGTTCGCCGGAGCTTGGTTCCGGTGAGTCCGATGCACATCACAGTATAGATATGGTGCATATTGCCCTCGTCCAGAATGGGCGGGTGAGACGGTGA 561 0.5383 MDDHQSLFTGKVSAILIAMGTASFVLTIYHLIILCRNQHPHATNHNSSQQERSITAPSPSAPSRSREQSASLSHLIPAHKYVKKKKNDDDVADGDGDEDDACAVCLGDFEEGEELRTLPECMHSFHVPCIDTWLHSHSSCPVCRLDATPSPAVIHRSPELGSGESDAHHSIDMVHIALVQNGRVRR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0476 186 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Apr3g0476 186 SUPERFAMILY RING/U-box 92 150 - -
Apr3g0476 186 CDD RING-H2_RNF111_like 102 146 - -
Apr3g0476 186 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 6 186 - -
Apr3g0476 186 MobiDBLite consensus disorder prediction 42 70 - -
Apr3g0476 186 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 186 IPR044675 -
Apr3g0476 186 Pfam Ring finger domain 101 144 IPR001841 -
Apr3g0476 186 SMART ring_2 102 143 IPR001841 -
Apr3g0476 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0476 Apr-Chr3 9878852 9879428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0476 16 174 C3H Transcription Factor Family AT5G17600 32.530 4.64e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0476 - - lja:Lj0g3v0111029.1 189.504