Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0474 ATGAAACACCCATCAAAGCCATGGAGGCCATTGACCACAAACTGCTGCGCAATTGAGGACCAAACTATCTTTGAGAATTTTAGTGGCTGCAGGTCCTCAACCAGTTCCTACATGTCAAAGGATACAGCACAATTACCTTCATTTCATTGGTTGTCTTTCTCTGATCTTAGTCATTCCAATGAAGATCTTGCACAGTCTTTTGGCTCGGATTTGTACGATTTTCAGCTGAATGAGCTGCGTGCTGTTACTCAGAATTTTTCGAGCAATTTCTTGTTGGGTGAAGGAGGGTTTGGAACAGTTCATAAGGGTTATATAGATGGTAACTTGAGAAGGGGTTTGAAAGCTCAGCATGTTGCTGTTAAGGTTCTCAATACTGAAGGCTTACAAGGACACCGCGAGTGGCTTGCAGAAGTGATATTTCTAGGGCACCTAAGACACCAAAATTTGGTCAAGTTGATTGGATATTGTTACCAGCATGAAGAACAGCTGCTTGTATACGAATTCATGCCCAGGGGAAGTTTGGAGAATCACTTGTTCAGAAGAAGAACATCACTTCCGTGGGCAACGAGATTAAAGATCACAATAGGTGCAGCTAAAGGTCTTGCCTTCTTGCATGCAGCTAAGAATCCGGTCATTTACAGAGATTTCAAGACTTCCAATATCTTGCTCGATTCAGACTTCACAGCCAAACTTTCAGATTTTGGACTTGCAAAAATGGTGGCAGAGGGATCAAAGTCACATGTTACGACCAGAGTTATGGGCACCTATGGATATGCTGCCCCTGAATACATCTCCACAGGGCACTTGACAACAAAAGGTGATGTCTATAGCTTTGGGGTAGTCCTTCTAGAACTGCTTACAGGAAGGAGAACAATGGACAAGAGAAGACCAAAGACTGAGCAAAACCTTGTAGATTGGTCAAAACCGTACTTGAGCAATGGCAAGAGGTTTTTGTGCATTGTGGATCCAAAGCTTGCAGGCCAATATTCTGTCAAGGGTGCAAAGGAGATGGCTTTTTTGGCATTGCAGTGCACAAGTTTGAATCCTAAAGACAGACCAAGAATGCAAACAATTGTTGAAACTCTTGAAAGGCTACAACAGTTCAAGGATATGGCAGTTTCATGGAGACACTGGCCATCATCACCACAATGTATTAGAAATAGACCATCCAATAATATAAAAATTGATCTTAGAGGCGGTGCAAACCACAGGCAGTTTTCTCCTCTAGTTTCAAACAAAACAACTGTAAGAAAACAGAGTATTTGA 1266 0.4218 MKHPSKPWRPLTTNCCAIEDQTIFENFSGCRSSTSSYMSKDTAQLPSFHWLSFSDLSHSNEDLAQSFGSDLYDFQLNELRAVTQNFSSNFLLGEGGFGTVHKGYIDGNLRRGLKAQHVAVKVLNTEGLQGHREWLAEVIFLGHLRHQNLVKLIGYCYQHEEQLLVYEFMPRGSLENHLFRRRTSLPWATRLKITIGAAKGLAFLHAAKNPVIYRDFKTSNILLDSDFTAKLSDFGLAKMVAEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKGDVYSFGVVLLELLTGRRTMDKRRPKTEQNLVDWSKPYLSNGKRFLCIVDPKLAGQYSVKGAKEMAFLALQCTSLNPKDRPRMQTIVETLERLQQFKDMAVSWRHWPSSPQCIRNRPSNNIKIDLRGGANHRQFSPLVSNKTTVRKQSI* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0474 421 PANTHER OS01G0588500 PROTEIN-RELATED 32 387 - -
Apr3g0474 421 Gene3D Phosphorylase Kinase; domain 1 51 168 - -
Apr3g0474 421 Pfam Protein tyrosine and serine/threonine kinase 92 362 IPR001245 GO:0004672|GO:0006468
Apr3g0474 421 CDD STKc_IRAK 92 365 - -
Apr3g0474 421 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL15-RELATED 32 387 - -
Apr3g0474 421 SUPERFAMILY Protein kinase-like (PK-like) 74 385 IPR011009 -
Apr3g0474 421 ProSiteProfiles Protein kinase domain profile. 86 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0474 421 ProSitePatterns Protein kinases ATP-binding region signature. 92 121 IPR017441 GO:0005524
Apr3g0474 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Apr3g0474 421 Gene3D Transferase(Phosphotransferase) domain 1 169 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0474 Apr-Chr3 9856538 9859442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0474 74 405 Glycoside Hydrolase AT3G07070 47.917 1.41e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr3g0474 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0474 - - gmx:100804970 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0474 3 9856538 9859442 Apr3g0474 3 9856538 9859442 ECH