Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0468 ATGGGATCCACTGGTAGCAAAGCCACTTCCTCTTGCGGTTCATCCACAACATCCTCTTCTTCGGGGCGTTTTAGGAAAGGTCGATCCAAGGGCCTTAGAGGTTTTCAGTCTTATTGTCTTGGAACAACTTCTGGATCTCACGACAGTGACAGTGAGGACCAGGTTTGTAATCAGATTAAAATAAATAGCAGTGATATTAAATATGCGGGTGATGGCGGTGAAAGAGAGTCAGATGAGGTGAAAGCTGAGTCTTTTAGAAAGGTTAAAGCCAGGGATATGACTTGTATACCCTCTAACACTGACCTTGATGAGTGGGGTGAAACAAGCATCCGCAACACTTCATCCGGAACTGGTAGCAGCTCTGTTCATGCTTCTTCAACTCATTCCTTGAACCCTACAAGTAATTTCCTTTCTCAATTTAGCCTCATTCCTGGTAATGTAAGCTTCAGACTTAGCAGAGCCAGCAGTTTGGGGTTGTCAACGCCTTGTCTTGTTTCTTCTGCAAATCTCTCAATATTTGACAATGAAGATGGGCAAAATATACATGCAAGGCCTTCAGGAAATTTGATTGACAGAAATGATACACGACAATGCAGTGACTTGCTTCCTGAATCTTTTGCAAATAAAATACCTACACAGTGTCTTGAAGGCGCTGCAAATAATTTAAGGTCAACTTCCCCGGCATCAGGTTTGCCTGGCAACTTGCTGAACAATAGCACAGGTGGAGTAGGTACACGAGAAAGGCAGGATGTGAACTTATTTTCTTCAAGAAATCAAACAGAGACAGCAAATGTTGAGACAAGACATATTGACCGACGGAATGGAGCACAAGAACCAGTTGAACGGAATATTCATTTTAGCCGAACTTTAAGTGTTGGAAGACTTCGTGACAGAGTTCTTCGTCGATCAACATTACCTGACCTCACTTTTTGCCCTCTCCAACAAGAGAGAGAAATAAGAGATGCTAGTCAGGACACTAGAAGGCAAGCAGCAGAGGGAGATTCAAGAGTGTCACCATCTGATCTTAGTGTTGTTAATTCTTCTACATTAGAATATCCTTCATCTAGTATGCCTAACTCCATGTTTAGCAACCAAGAATATGGCATTGAGACTTCACGCTTGAGAGAAGGGAGGTATCAGGATCTACTTGAACAAAGGTCCAATTTCCTTGAGCGGAGAAGAAGAATACGGTCCCAGGTTCGTGCACTTCAGAGGTTGGGTAGTCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAATGGTCGTTGTACATGTCGAATCAGTAATCGTGACACTAATTCAAATGATGATACCACTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGCCCTTCTGTATCTTCTATTGGATCTGTTCCTGCCCCTAATGATGTTGTGGAGTCCTTGCCAGTCAAATTATATGAGAAGTTGCATAAGCATCAAGAAGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAAAATGGAGACAGTGTACGAGTACTGCCTTGTCATCATGAATTTCATAGAAGTTGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTTTGCCCACTTTGTCGGGGTGACATATGCATATCTGATTCATTGCCAACAGAAAACTTGAGTAGCTAG 1725 0.4232 MGSTGSKATSSCGSSTTSSSSGRFRKGRSKGLRGFQSYCLGTTSGSHDSDSEDQVCNQIKINSSDIKYAGDGGERESDEVKAESFRKVKARDMTCIPSNTDLDEWGETSIRNTSSGTGSSSVHASSTHSLNPTSNFLSQFSLIPGNVSFRLSRASSLGLSTPCLVSSANLSIFDNEDGQNIHARPSGNLIDRNDTRQCSDLLPESFANKIPTQCLEGAANNLRSTSPASGLPGNLLNNSTGGVGTRERQDVNLFSSRNQTETANVETRHIDRRNGAQEPVERNIHFSRTLSVGRLRDRVLRRSTLPDLTFCPLQQEREIRDASQDTRRQAAEGDSRVSPSDLSVVNSSTLEYPSSSMPNSMFSNQEYGIETSRLREGRYQDLLEQRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISNRDTNSNDDTTARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVESLPVKLYEKLHKHQEDAAQCYICLVEYENGDSVRVLPCHHEFHRSCIDKWLKEIHRVCPLCRGDICISDSLPTENLSS* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0468 574 MobiDBLite consensus disorder prediction 1 25 - -
Apr3g0468 574 MobiDBLite consensus disorder prediction 319 334 - -
Apr3g0468 574 MobiDBLite consensus disorder prediction 101 128 - -
Apr3g0468 574 MobiDBLite consensus disorder prediction 225 248 - -
Apr3g0468 574 ProSiteProfiles Zinc finger RING-type profile. 516 558 IPR001841 -
Apr3g0468 574 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 573 - -
Apr3g0468 574 MobiDBLite consensus disorder prediction 99 128 - -
Apr3g0468 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 562 IPR013083 -
Apr3g0468 574 SUPERFAMILY RING/U-box 494 564 - -
Apr3g0468 574 MobiDBLite consensus disorder prediction 319 345 - -
Apr3g0468 574 CDD RING-H2_PA-TM-RING 515 558 - -
Apr3g0468 574 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 573 - -
Apr3g0468 574 Pfam Ring finger domain 515 558 IPR001841 -
Apr3g0468 574 SMART ring_2 516 557 IPR001841 -
Apr3g0468 574 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0468 Apr-Chr3 9740697 9745280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0468 270 565 C3H Transcription Factor Family AT5G45290 64.026 2.17e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0468 - - gmx:100800896 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0468 3 9740697 9745280 Apr3g0468 3 9740697 9745280 ECH