Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0425 ATGATCAAAGCTTGGATTCTTGTACTTGTGATCTTCTATAGTAGCTTTCTTCCAAAAGGAACCGGCAATGTTTCTCCAAAACCAGGTACCGTTAACATTGGGGCAATTTTATCTGTCAACTCAACAATTGGCAAAGTGGCTAAAGTTGCCATACAAGCAGCAGTGGATGATATAAATTCCAACGCAGCAATTCTCAATGGAACTAAGCTTAACATTTCAATGCAGGACACGAAAATCTCCAATGGATTTCTAGGAATCATTGATTCGTTTCTATTGATGGAGAGTGACACAGTGGCCATAATTGGTCCCCAGTACTCAGTTATGGCGCATGTAATTTCTCATATTGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCTGCAACAGATCCTACACTGACTTCACTACAGTTCCCATATTTTGTAAGGACTACACAGAGTGATCTATATCAGATGGCTACTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGATGTGATAGCAATTTATGTTGATGATGATCATGGAAGAAATGGGGTAGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTTGTAAAATATCATATAAAGCAACCTTTAGGCCATATAATGTTACCCGAGAAGAAATAAACAGTGCATTAGTTAAGGTAGCTTTAATGGAGTCTAGAGTAATAGTCCTTCACATATACCCTTCTTTTGGTCTGGAAGTACTTCATGTGGCTCAGTCACTTGGCATGATGCGAAGTGGTTATGTGTGGATAGCCACAGATTGGCTTTCTACAGTACTAGATTCAAATCCATCATTGTTCACAACTCCAACTACGAATGATATCCAAGGTGTTATCACCTTGCGCATGTATACCCCAGAATCAGAAATCAAAAGAAAATTTATTTCTAGGTGGACCAAACTGAGCCAGGTAGAAGATCCTACTCATAGTCCATTGGGGTTAAATATTTTTGGTCTATATGCCTATGACACTGTTTGGGTTCTTGCCTATGCACTTGATGCGCTTCTCAAGGATGGGGGAACTTTGTCATTTTCAAATGATTCAAGTCTAAACATTTTAAGAGGGGACACACTTCATCTAGATACTATGGGGGCCTTTCTTAATGGTAGCACGTTGCTGAAAAAAATTTTAGAGGTCAACAAAACTGGCATTACAGGGAAAATGATGTTTGATTCAGATGGAAATTTAATGAATCCATCATATGAAATCATTAATGTGATAGGTAGTGGAATTAGGACGATTGGTTATTGGTCTGAACCCTCTGGCCTCCATTCTGGAGAATCTCCTAATCATTCCAATTCTAGTGAAGGACTGTATGGGGTCATTTGGCCCGGTCAAACAACTAAAACACCTCGTGGTTGGGCTTTTGCAAGCAATGGAAGACCCTTAAGAATTGGGGTGCCACTTAGAATTAGCTACCCTCAATTTGTGACAAGAATTGAGGGTACTGAAATATTTAGTGGTTATTGCATTGATGTGTTCAATGCTGCCTTAAACTTGTTGCCTTATCCGGTTCCCTATAGGTTTATTCCCTTTGGTGATGGTAAAACCGAGCCGTCAATTTCAGACCTTCTTCACATGTTCACAACCGGTGCCTATGATGCCGTGGTGGGGGACATTACAATTACCACAAATAGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGGGCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCAAGTGCTTGGGCTTTCCTCACACCATTCACTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTTGTGGGAGTTATTGTTTGGATTTTAGAGCGTCGTGTAAATGATGACTTTAGAGGCCCAGCTCGAAGACAATTTGTCACTATTATTTGGTTTAGCTTTTCAACCCTATTTTTTGCACATAGAGAGAAAACTGTCAGCACCCTTGGTCGCTTAGTGCTAATCGTATGGCTATTTGTGGTTTTGATACTCAACTCTAGCTATATTGCAAGCCTTACTTCCATCCTTACAGTGGAACAACTCTCCTCTCCAGTTAAAGGAATTGAAAGCTTAGTAACAACCAACGACCGCATTGGTTTCTGGAAAGGTTCATTTTCTGAAAATTATCTAACTGAGGAACTCAACATACACAGATCCAGGCTTGTTCCTCTCAACTCTCCATCAGAATATGAAAAGGCCTTAAAGGATGGACCAGCAGGTGGTGGTGTTGCGGCAATAATAGATGAACGTGCTTACTTGGAGCTCTTCCTAGCAACCAGATGTGAATTTAGTATTGTCGGTCAAGAGTTCACCAAGATGGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCTCTAGCCATTGACTTGTCAACTGCAATCCTAAAACTATCAGAGAATGGTGAGCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCTTGCAGCTCGGAAGGTGCAAAACAAAGCATCGATCGACTTGAGTTAAAAAGCTTTTGGGGTCTCTTCTTACTGAGTGGCATAGCATGCTTCATTGCTCTCCTTTGCTATGTTATTAAAATGGTCTATCATTTTAGCAGGCACTCCAACAGTAACCTTGAAGGATCATCACACACTACTCGTCTTCAATCATTCTTTACCTTTGTGAATGAAAAAGAAGAGGAAGACATACAGGCCACAGACAAGGCAAATGGAGAAGTGCTCTTGTAG 2700 0.4059 MIKAWILVLVIFYSSFLPKGTGNVSPKPGTVNIGAILSVNSTIGKVAKVAIQAAVDDINSNAAILNGTKLNISMQDTKISNGFLGIIDSFLLMESDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMATVAEIVDHFQWRDVIAIYVDDDHGRNGVAALGDKLAEKRCKISYKATFRPYNVTREEINSALVKVALMESRVIVLHIYPSFGLEVLHVAQSLGMMRSGYVWIATDWLSTVLDSNPSLFTTPTTNDIQGVITLRMYTPESEIKRKFISRWTKLSQVEDPTHSPLGLNIFGLYAYDTVWVLAYALDALLKDGGTLSFSNDSSLNILRGDTLHLDTMGAFLNGSTLLKKILEVNKTGITGKMMFDSDGNLMNPSYEIINVIGSGIRTIGYWSEPSGLHSGESPNHSNSSEGLYGVIWPGQTTKTPRGWAFASNGRPLRIGVPLRISYPQFVTRIEGTEIFSGYCIDVFNAALNLLPYPVPYRFIPFGDGKTEPSISDLLHMFTTGAYDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFTPMMWFVTGMFFLVVGVIVWILERRVNDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIVWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTTNDRIGFWKGSFSENYLTEELNIHRSRLVPLNSPSEYEKALKDGPAGGGVAAIIDERAYLELFLATRCEFSIVGQEFTKMGWGFGFPRESPLAIDLSTAILKLSENGELQRIHDKWLTRSACSSEGAKQSIDRLELKSFWGLFLLSGIACFIALLCYVIKMVYHFSRHSNSNLEGSSHTTRLQSFFTFVNEKEEEDIQATDKANGEVLL* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0425 899 Pfam Receptor family ligand binding region 49 412 IPR001828 -
Apr3g0425 899 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 888 - -
Apr3g0425 899 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Apr3g0425 899 Gene3D - 460 577 - -
Apr3g0425 899 PANTHER GLUTAMATE RECEPTOR 17 888 - -
Apr3g0425 899 SMART GluR_14 468 809 IPR001320 GO:0015276|GO:0016020
Apr3g0425 899 Gene3D - 49 402 - -
Apr3g0425 899 PIRSF IGluLR_plant 1 898 IPR017103 -
Apr3g0425 899 Gene3D - 578 703 - -
Apr3g0425 899 Gene3D - 147 427 - -
Apr3g0425 899 Pfam Bacterial extracellular solute-binding proteins, family 3 475 808 IPR001638 -
Apr3g0425 899 Gene3D - 704 811 - -
Apr3g0425 899 SUPERFAMILY Periplasmic binding protein-like II 443 809 - -
Apr3g0425 899 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Apr3g0425 899 SUPERFAMILY Periplasmic binding protein-like I 27 458 IPR028082 -
Apr3g0425 899 CDD GluR_Plant 465 807 - -
Apr3g0425 899 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Apr3g0425 899 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Apr3g0425 899 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0425 Apr-Chr3 8401530 8405769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0425 1 892 Ion Channels AT1G42540 57.065 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0425 K05387 - gmx:100790502 1498.8