Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0416 ATGCCGAAGGCCAAAGCTAAAGCTGACGCCAAAGCTTCCGATAACCGGTTGAAGCGCAAGGGCGCTGGTGCTGGAAGGAAACAATCGAAGAAAGCTGCTAAGGATCCTAACAAGCCGAAGAGGCCTCCAAGTGCTTTTTTCGTCTTTATGTCTGAGTTCAGAGAGCTGTACAAGAAGGAGCATCCCAACAACAAATCTGTTGCAGTTGTAGGGAAAGCTGGCGGTGACAAATGGAAATCCATGTCTGATGCTGAGAAGGCTCCCTTCGTTGCTAGGGCAGAAAAGAAGAAAGAAGAGTATGATAAAACCATTTTGGCCTACAACAAGAAATTGGAGGGCAAGAGTCCCTCAGAGGAAGAGGAGTCTGACAAGTCGAAGTCTGAAGTTAATGATGAGGAGGAAGAGGAGGAGGAGGACGATGATGAGTGA 429 0.4779 MPKAKAKADAKASDNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFRELYKKEHPNNKSVAVVGKAGGDKWKSMSDAEKAPFVARAEKKKEEYDKTILAYNKKLEGKSPSEEEESDKSKSEVNDEEEEEEEDDDE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0416 142 CDD HMGB-UBF_HMG-box 39 104 - -
Apr3g0416 142 MobiDBLite consensus disorder prediction 108 124 - -
Apr3g0416 142 Gene3D High mobility group box domain 22 124 IPR036910 -
Apr3g0416 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 141 - -
Apr3g0416 142 MobiDBLite consensus disorder prediction 125 142 - -
Apr3g0416 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 39 108 IPR009071 -
Apr3g0416 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 3 141 IPR031061 -
Apr3g0416 142 MobiDBLite consensus disorder prediction 108 142 - -
Apr3g0416 142 Pfam HMG (high mobility group) box 39 108 IPR009071 -
Apr3g0416 142 MobiDBLite consensus disorder prediction 1 45 - -
Apr3g0416 142 SUPERFAMILY HMG-box 30 111 IPR036910 -
Apr3g0416 142 MobiDBLite consensus disorder prediction 1 21 - -
Apr3g0416 142 SMART hmgende2 38 109 IPR009071 -
Apr3g0416 142 Coils Coil 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0416 Apr-Chr3 8131138 8133161 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Apr3g0416 HMG_box 2.2e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0416 K25507 K22507 gmx:100305957 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0416 3 8131138 8133161 Apr3g0416 3 8131138 8133161 ECH