Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0414 ATGGGTCTCTGCTTCTCCTCTTTCTCTCGCTCTTCCCTCAACCGTCCTCACTATTCAGGTTCAGCAAGCACAGACAGCAAGACCGTGGGATTCTCCGCAACCACGAGCAGTGCCGGAAAGAGCCAATTCTCGGAGATTGCGAGTGGAAGCATCGACGGCGAAGGTTCCTTTCCCCTTCCTATTGCTTCCTCTCATGGCCAGATTCTGGAACGCCCGAACCTGAAGGTTTTCAGCTTCGGGGACTTGAAATCTGCGACGAAGAGTTTCAAGTCTGACACATTGCTGGGTGAAGGTGGCTTTGGAAGAGTTTACAAAGGTTGGTTGGATGAGAAGACCCTCACACCTGCTAGAGCTGGTTCTGGCATGGTCGTTGCCATAAAAAAGTTGAACCCTGAAAGCACGCAAGGCTTTCAAGAATGGCAGTCAGAAGTCAACTTTTTGGGAAGGCTTTCTCACCCCAACTTGGTCAAGCTATTGGGTTACTGTTGGGACGATGACGAGCTTCTTCTTGTGTACGAGTTCATGCCAAAGGGAAGCTTGGAGAACCATCTCTTCAGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGACTTAAAATAGCCATCGATGCAGCTAGAGGATTGGCTTTCTTGCACTCTTCGGAAAAGCAAGTCATATATAGAGATTTCAAGGCCTCTAATATACTTCTTGATGGGAATTACAAAGCAAAGATCTCAGATTTTGGCTTGGCTAAATTTGGGCCATCTGGGGGAGAATCACATGTAACTACCAGGATCATGGGCACGTATGGTTATGCTGCTCCGGAATACATCGCAACAGGCCACTTGTATGTGAAGAGTGATGTGTATGGCTTTGGTGTAGTGCTGCTTGAAATGCTTACAGGTTTGAGGGCACTTGATACAAAACGCCCAACAGGGCAGCATAACCTGGTTGAATGGGTTAAGCCTTATCTCTCCAGCAAAAAAAAGTTGAAAACCATTATGGATGCTAAAATAGAGGGCCAGTATTCACCCAAAGCAGCATTACAAGCGGCACAACTTACTCTAAAATGCTTAGAACCTGACCCTAAACAGCGTCCTTCTATGAAAGATGTACTTGAGACATTGGAAGCAATTGAAACTATCCATGACAAAACCAAGAACCGCAATTCTCAGCACACTTCTAATCAACCTCCACTTCATCCTCGGCATAGAGTTGTAAAAGTATAA 1215 0.4593 MGLCFSSFSRSSLNRPHYSGSASTDSKTVGFSATTSSAGKSQFSEIASGSIDGEGSFPLPIASSHGQILERPNLKVFSFGDLKSATKSFKSDTLLGEGGFGRVYKGWLDEKTLTPARAGSGMVVAIKKLNPESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIDAARGLAFLHSSEKQVIYRDFKASNILLDGNYKAKISDFGLAKFGPSGGESHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDTKRPTGQHNLVEWVKPYLSSKKKLKTIMDAKIEGQYSPKAALQAAQLTLKCLEPDPKQRPSMKDVLETLEAIETIHDKTKNRNSQHTSNQPPLHPRHRVVKV* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0414 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Apr3g0414 404 ProSitePatterns Protein kinases ATP-binding region signature. 95 128 IPR017441 GO:0005524
Apr3g0414 404 Pfam Protein tyrosine and serine/threonine kinase 92 371 IPR001245 GO:0004672|GO:0006468
Apr3g0414 404 PANTHER OS01G0588500 PROTEIN-RELATED 52 385 - -
Apr3g0414 404 Gene3D Phosphorylase Kinase; domain 1 61 174 - -
Apr3g0414 404 Gene3D Transferase(Phosphotransferase) domain 1 175 394 - -
Apr3g0414 404 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 52 385 - -
Apr3g0414 404 MobiDBLite consensus disorder prediction 1 31 - -
Apr3g0414 404 MobiDBLite consensus disorder prediction 378 404 - -
Apr3g0414 404 SUPERFAMILY Protein kinase-like (PK-like) 67 374 IPR011009 -
Apr3g0414 404 ProSiteProfiles Protein kinase domain profile. 89 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0414 404 CDD STKc_IRAK 95 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0414 Apr-Chr3 8046663 8050465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0414 75 379 Glycoside Hydrolase AT3G07070 50.327 8.74e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr3g0414 PK_Tyr_Ser-Thr 7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0414 - - gmx:100794193 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0414 3 8046663 8050465 Apr3g0414 3 8046663 8050465 ECH
Apr7g0264 7 8012736 8015555 Apr3g0414 3 8046663 8050465 PCT