Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0410 ATGGGAGGTGATGCTACTGTTGGGGAATCAGAAGCGGTCAACGTCAACATCAACGTTCGCTGCTCCCACGGTTCCAAGTTTTCCGTTCAGATTTCCCTCGATTCCACCGTCGGTTCCTTCAAGGATCTCGTCGCTCGCAACTGCGACATCCCCGCCGAACAACAGCGTCTCATTTACAAGGGTCGCATCTTGAAGGACGATCAAACCCTTCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGAGGCTTTGCCCCTATCAATACGACTGGCAGCAGTGGGACCAATACTAATAGCACCAATGCCACAACAAATAATCCCAGAGGTGCTCCTACTAATGAAGGTGGGGGTTTAGGAGGGTTTGGTTTGGGAGGTTCACTATTCCCTGGACTAGGTGTCAATGGAACTGGTGGCAATGGTTTATTTGGCCAGGGTTTTCCTGATCTTGAGCAGATGCAGCAACCATTTATTTCTAATCCCAATTTAGTGAGGGAAATAATGAATACACCTGCTATGCAGAATCTAATAAATAATCCAGAGATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATCGAATCTTCGCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAACAACGCAGCACTTTCAGGGACTCATGTTGGCCAAGCTAGGGACCAATCAACTAATCCCTCAACCACTAGTTCTGAAACAACTGCTGGCTCTCCCGTACCTAATACCAACCCACTTCCAAATCCTTGGTCCTCTACTGCTGGAACTGGTGGTGCCCAAAATAACACCAGAAGGTCAAACCCTGGTGGGGATGCTAGGCAGCAAGGACCTACTGGCTTAGGAGGGCTTGGTCTGCCAGACCTTGAAAGCATGCTGGGTGGTAGTGCTATGCCAGATCCTGCTTTATTGACCCAGTTGATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATCCTTTCCAATCCACAAACTTTGAATCAGATTCTCGGTGTTAATACTGAGCAGCGGGGCATGCCTGATTTAAATTCTCTTAGAGAATTAATGCAAAATCCAGAATTCCTTCGCATGTTTTCTTCACCTGAGACATTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTTTCTCAGCTTGGTCAGCAGCAATCAACACGGGACTCTGGTCAAACTGGCGGAGGCACTGGTATGCAAGCCAACCGTCTTCTCTTTCTGTCAATAGAAACTTTGTACCATTGTTGCTGTAGTTTTGCATTGGCGATTAAAATTGGACCATTGAACAACAATTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGAAGCCTGGCTGCTCCAAATAGATCAGATGAGCCACCGGAGCAATTGTATGCCACCCAACTTACACAGCTTCAAGAGATGGGATTCTTTGACACTCAAGAGAACATAAGAGCTCTTGTTGCAACCTCAGGAAATGTTCATGCAGCAGTTGAACGACTACTAGGGAACTCTGGTCAGTAG 1710 0.4637 MGGDATVGESEAVNVNINVRCSHGSKFSVQISLDSTVGSFKDLVARNCDIPAEQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPINTTGSSGTNTNSTNATTNNPRGAPTNEGGGLGGFGLGGSLFPGLGVNGTGGNGLFGQGFPDLEQMQQPFISNPNLVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNNAALSGTHVGQARDQSTNPSTTSSETTAGSPVPNTNPLPNPWSSTAGTGGAQNNTRRSNPGGDARQQGPTGLGGLGLPDLESMLGGSAMPDPALLTQLMQNPAISQMMQSILSNPQTLNQILGVNTEQRGMPDLNSLRELMQNPEFLRMFSSPETLQQLLSFQQALLSQLGQQQSTRDSGQTGGGTGMQANRLLFLSIETLYHCCCSFALAIKIGPLNNNLGLEMLSSMFGGLGAGSLAAPNRSDEPPEQLYATQLTQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0410 569 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 521 566 IPR015940 -
Apr3g0410 569 Gene3D - 187 245 - -
Apr3g0410 569 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 493 569 - -
Apr3g0410 569 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 8 469 - -
Apr3g0410 569 MobiDBLite consensus disorder prediction 267 360 - -
Apr3g0410 569 Pfam UBA/TS-N domain 527 563 IPR015940 -
Apr3g0410 569 PANTHER UBIQUILIN 8 469 - -
Apr3g0410 569 PANTHER UBIQUILIN 493 569 - -
Apr3g0410 569 SMART ubq_7 15 86 IPR000626 GO:0005515
Apr3g0410 569 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Apr3g0410 569 SUPERFAMILY Ubiquitin-like 12 100 IPR029071 -
Apr3g0410 569 MobiDBLite consensus disorder prediction 267 340 - -
Apr3g0410 569 CDD Ubl_Dsk2p_like 15 87 - -
Apr3g0410 569 SMART uba_6 527 565 IPR015940 -
Apr3g0410 569 MobiDBLite consensus disorder prediction 92 114 - -
Apr3g0410 569 Gene3D - 5 97 - -
Apr3g0410 569 SUPERFAMILY UBA-like 523 565 IPR009060 GO:0005515
Apr3g0410 569 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Apr3g0410 569 MobiDBLite consensus disorder prediction 92 115 - -
Apr3g0410 569 Gene3D - 509 569 - -
Apr3g0410 569 CDD UBA_PLICs 527 565 - -
Apr3g0410 569 SMART CBM 192 231 IPR006636 -
Apr3g0410 569 SMART CBM 141 179 IPR006636 -
Apr3g0410 569 SMART CBM 343 396 IPR006636 -
Apr3g0410 569 SMART CBM 399 434 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0410 Apr-Chr3 7965093 7971128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0410 15 84 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 6.37e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0410 K04523 - gmx:100776447 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0410 3 7965093 7971128 Apr3g0410 3 7965093 7971128 ECH