Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0391 ATGGGTTATGGTTCTTTTGAGAACGCTTTTCCTTTTCCATCGTCGCTTAAGCCGAGCGATGCATCACCGGAGTGGAACAACAAAGCAGACAACGCGTGGCAACTAACCGCGGCAACGTTGGTGGGGCTTCAGAGTGTTCCTGGGCTTGTGATCCTCTACGGCAGCATGGTTAAGAGAAAATGGGCCGTGAACTCTGCTTTCATGGCCCTATATGCCTTTGCTTCGGTCCTCGTTTGTTGGGTTTCGTGGGCCCATCGCATGGCATTCGGCAATAAGCTTGTGCCCTTTGTGGGAAAGCCCAACCTTGCTCTTGATGACGGGTTTCTACTTGAAAAGTCAACGATGGGTTTATTTCCAATGGTTGACTTTGTGTTCTATCAATTTGCTTTTGCCGCAATTACCGTAGTGTTACTTGCTGGGTCTTTGCTTGGGAGAATGAACTTTTATGCGTGGATGGTGTTTGTTCCTATGTGGCTTACGCTGTCCTACACCATTGGTGCCTTCACCATATGGGGCGATGGGTTTCTTGAAACAAAAATAATTGATTATGCCGGTGGATTTGTTATTCATCTATCTTCTGGCGTTGCAGGTTTCACAGCTGCTTATTGGGTTGGTCCAAGAATTTCACAAGACAGGCAAAACTTTGCACCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTTCTGTGGATGGGTTGGACAGGGTTTAACGGTGGAGCACCGTTCCAAGTGGGTGAGATCGCATCCTTAGCCATATTTAATACCCACCTATGCACTTCCACAAGCCTACTTGTTTGGCTTACACTAGACATGATTGTTTATCAGAAGAGCTCAGTCATAGGGGCCGTCCAGGGAATGATCACTGGCCTCGTTTGCATCACACCAGGTGCAGGGTTGGTGGAGTCATGGGCTGCTGTATTGATGGGAGCTTTATCTGGTTCCATTCCATGGTACACAATGATGGTGTTGCACAGAAGATCTGCGTTCTTTCAAAGGGTTGATGATACATTAGGAGTTTTTCACACTCATGCTGTGGCTGGTCTTCTTGGGGGTCTCCTTTCTGGTGTATTTGCCAAACCTAAACTTTTGAAGAAAATGTATCCAACCATGCATTATGGACCAGGCTTATTATATAGCTTTTTAGAGGGAAAAGTGGATCAAGGCTTCAAGCAAATATGGTACCAATTACTAGGAGCAACTTTTGTTACTATTTGGAATGTCATTGTTACTAGCCTCATTTGTATTCTTATAAGCCGCATTATGGATCTTAGGATGCAAGAAGAGGACCTTGAGATTGGTGACGATGCTGTTCATGGGGAAGAAGCATATGCATTGTGGGGAGATGGAGAGAGAATGCGAGTCCCTCTTCGTCTTCATATAAGTCCAACAATTCCTTCCCTGTGTCGCCGAAAGCTTCCAATTCTTGCAAATACTGAAGAAATAGACCAATAG 1455 0.4536 MGYGSFENAFPFPSSLKPSDASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFASVLVCWVSWAHRMAFGNKLVPFVGKPNLALDDGFLLEKSTMGLFPMVDFVFYQFAFAAITVVLLAGSLLGRMNFYAWMVFVPMWLTLSYTIGAFTIWGDGFLETKIIDYAGGFVIHLSSGVAGFTAAYWVGPRISQDRQNFAPNNIIHMLGGAGFLWMGWTGFNGGAPFQVGEIASLAIFNTHLCTSTSLLVWLTLDMIVYQKSSVIGAVQGMITGLVCITPGAGLVESWAAVLMGALSGSIPWYTMMVLHRRSAFFQRVDDTLGVFHTHAVAGLLGGLLSGVFAKPKLLKKMYPTMHYGPGLLYSFLEGKVDQGFKQIWYQLLGATFVTIWNVIVTSLICILISRIMDLRMQEEDLEIGDDAVHGEEAYALWGDGERMRVPLRLHISPTIPSLCRRKLPILANTEEIDQ* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0391 484 Gene3D Ammonium transporter AmtB like domains 14 447 IPR029020 -
Apr3g0391 484 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519|GO:0016020|GO:0072488
Apr3g0391 484 PANTHER AMMONIUM TRANSPORTER MEP2 9 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Apr3g0391 484 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519|GO:0016020|GO:0072488
Apr3g0391 484 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005887
Apr3g0391 484 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005887
Apr3g0391 484 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005887
Apr3g0391 484 PRINTS Rhesus blood group protein signature 345 361 IPR002229 GO:0005887
Apr3g0391 484 PANTHER AMMONIUM TRANSPORTER 9 472 - -
Apr3g0391 484 TIGRFAM amt: ammonium transporter 30 444 IPR001905 GO:0008519|GO:0016020|GO:0072488
Apr3g0391 484 SUPERFAMILY Ammonium transporter 25 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0391 Apr-Chr3 7668914 7671779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0391 120 452 Inorganic Solute Cotransporters AT2G38290 58.383 2.41e-135 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0391 K03320 - gmx:100815876 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1548 3 30407278 30411543 Apr3g0391 3 7668914 7671779 PCT