Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0387 ATGGAGTTTGTGGCAAATCAATGCCCTTCGATGGATTCCTTCGGGAATTTCACTGAGAGGGTCAAAAGGGTTGGTAACCTCTTCGTCTCTGCCATCATTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGCACTTTGTTGGGGGCTATGACTGGAGCCTTCATAGGCCAAGAGACAGAGAGTGGGTTCATTCGAGGTGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATGTTCTCTTGGTCTGTGGAAATCTGAGGAATCTGGAATTGGGTGTCTCTTATACTTGCTTGATGTTATTGCTAGCTTATTGAGTGGGAGACTAGTGCGTGAAAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAGATGAGCTTTGATGAGGTTCAAAACATCTTTGACATTGGGGGTGCCAAAGGCTTATCAAGAGATTCAGTTGCAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTGATGCTTCTGGGGAAAGAGTTTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGAGAAACAGTTAGAAGTTTGCCTCATTGTCATCACACGTTTCACCAACCTTGCATTGATAAGTGGCTCTTCAAGCATGGTTCTTGCCCATTGTGCAGAAGGGATCTGTAA 696 0.4526 MEFVANQCPSMDSFGNFTERVKRVGNLFVSAIIGNIFSAILTFCFALVGTLLGAMTGAFIGQETESGFIRGAAVGAISGAVFSIEVFECSLGLWKSEESGIGCLLYLLDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEMSFDEVQNIFDIGGAKGLSRDSVAKIPKITITSDNNVDASGERVSCSVCLQDFQLGETVRSLPHCHHTFHQPCIDKWLFKHGSCPLCRRDL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0387 231 CDD RING-H2_PA-TM-RING 186 228 - -
Apr3g0387 231 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 231 IPR044523 -
Apr3g0387 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 231 IPR013083 -
Apr3g0387 231 SMART ring_2 186 227 IPR001841 -
Apr3g0387 231 Pfam Ring finger domain 185 228 IPR001841 -
Apr3g0387 231 SUPERFAMILY RING/U-box 185 231 - -
Apr3g0387 231 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Apr3g0387 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 12 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0387 Apr-Chr3 7613332 7614945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0387 19 231 C3H Transcription Factor Family AT5G66070 74.178 5.98e-111 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0387 - - gmx:100816939 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1131 7 18272013 18274073 Apr3g0387 3 7613332 7614945 PCT