Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0365 ATGGGTACCAACTGCAGACACTTTTTTGATAGATTGCATAGTTTTGCGACTTCTTGGAAGAAAAGCAACACTCCAACTGGCAGAAGAAATTTACACAGAGATGTGGAAAAGGAAGAATTCCAATATGCCAGCACTCAATGTCTCTCATCCTATTACAGTGTCTTTGTGGTTCGCCTTGCAATCATGGCCATGCTAGCCATCTTGATTGGTCTACTCACTTTCTTGACATGGCATTTCACAAAGATTTATACCACAAAATCTCTTAACAGCTTGGCTTATGACCTGCGTTATGAACTTCTACAACGCCCCATCTTGAGGATGTGGAACGTTTTGAACTCTACTTCTGAAATTACAACAGCTCAGGTTAAGCTGTCTCAGTATGTCATCAGAAGCCACACCAACCTCGCCACTCTTGCAGACCAAGTTGAGATGTATGACGCAATGAGGGCTGTAACATGGGCACTGTTTGCTAGTAGAAAAGCTCTCAATTCAATAACTGTGAAATACAAGAATGGATTTGTCCAAGCATTCCATAGAGACCTGAAGGATAATAACACCTTTTATATTTACTCTGATCTTGCAAACTACTCCATTGTTGCCGATGGCTATAACGAGATCAATTCACTTTCAATGCATGAAGCTTGGAATGACAAAGACATTCATGATAACAAGTCTGCAATTTGGTACCGCGAACCACTTGACCCTGTCAGTGGTGAGAAGATTGGAAAAGCAATGCCAATTGCACCAGAAGACTCAATCAATATAGCTGGCCTCTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCTGTGAGCAAGTTTACAGATTCACCATTGCTTTCTGCAGCATTGCCAGTGTGGGACTCTTATAATAAAAGCATTGTGGCTGTTGTGGGTGTCACTACTGCACTTTATAGTGTGGGGCAGCTCATGAAAGAACTAGTTGAATTGCACAGTGGTCATATGTATTTGACTTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAATGCACCTCTATTGTCAAATTCAACAAAGCCACCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGATGTAATAAGAGAGGGAGCTCAGTGGCTACAGAAAACCTATGGGAAAAATTTCCCTCCAAGCCACGAGGTTCATGTAGAAAACGCCAGGCTAGGCCACCAAGAATATTACATTGATTCATTCTTCCTAAACATGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACACTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCCAAGGAAATGAAACTTAGAGCAGAATTGATTAGTCACCTGGAAGCAAGAAGGAAGGCAGAGGCGTCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCAGCAGTGATTGGGTTACTTGACATTCTTATATCTGATGATCGTCTCACAAATGAACAATGTGCAACTGTTACTCAAATAAGAAAATGCTCAACTGCCCTACTCCGTCTACTTAACAACATCTTGGATTTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGACGGGAGCTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTCGAGACTGTTTTAGATCTGTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGGTCAACAACTCAATCAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTGCAGTGATAATGCAAAATTTCCTCTTCAGCAAAAAAAATCACGATGTTCACAAAAGGCCAGAGTTAAGCAGCAAGAAAACCATGCAAAGAGGACCTCTACTAGAGATAACAAAATGATACTCTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCCGTGTTTGAAAGCTTTGAACAAGCTGATCCATCAACTACTAGACTACATGGAGGCACTGGTCTTGGTCTTTGCATCGTCAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAGAAAGGAGGGCCCAGGAACATTAATGAGATTATACCTTTGTCTCAGTGCACCCGTGCATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAAGGCTTAGTGGTACTGCTTGCACTACATGGAAACGTGGGCCGGTCAATTACATCAAAGTGGTTACAGAAAAACGGGGTGGTAACTATGGAGGCATCTGAATGGAATGGATTAACACAAATTCTGAGGGAACTCTTTCATTCAAGAAGTTCAGCTCGTAATGATGGCTTTGATGCACACTATTCAGTGCATGATGATTTAAAGTCTAAACTACTGAGCATACAGGAATTAAAAGACCCAATTTCTGTCATTGCTGTTGACATTGGACTACTTGACCTGAGCACAGATATATGGAAGGAACAACTCAACTTGCTTCACAAGTACTCTGGGAGAGCGAAATTTGTATGGATACTAAACCATGACTCCTCCAATACAATAAAGATGGAGCTTCGCAGGAAAGGACATACATTGACAGTGAGCAAACCCCTTTACAAAACAAAAATGATTCATATTTTGGAAGCTGTCATGAGGGAGAAAAATGATGAGCTACAAAAGAAAAACATGACTACTCCAAGAAGCACAATGAAAGAGGGTGATTTGCATGAGAGTCTTGAGATTGATTATACTCAATGTGATGTTGCAAGCTCAGATGGTTCTGACATATCAGAAATGAGTGGTTCTAATCTTGTTATTGCTAATGGAGAGAAGGCGGTGAAATCTCATCTATCATCACAATACCAGATTAATAACTTAGTTGAGTTAACAAATCAATATATGGAAGATAATAATCCTAGGAAGGAAGGGTTATGTCAAAGCAGCCTCAACTCTAATGATATCACTGCAGACGCCACGCTAAAATCATCCTCCCCAAAACAAGCATCTTCTGCAACCGGGTCTGAATATGGTGAAACACATAGGGCCAGTAGCTCAGGTAGAGCAACAAGCAGAAAGAAATCTCTTGAAGGTCTGAGGATATTGCTTGCCGAAGACACACCAGTAATTCAAAGGGTAGCAACCATAATGCTTGAAAAAATGGGAGCCACTGTTGTTGCTGTGGGTGATGGACAACAGGCAGTGGATGCTCTGAATGGCATGCCTAATGTTGAAGATTGTAGAAAGGAATCTCTCTTGAAGGACAGAAACACAAGATCTTCTGAAACTGAGATTCTCAGTGGCCCTCCATATGACTTAATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTACGAGGCAACAAAAGCAATCAGGAAATCAGAAGTGGGAACTGGCTTGCACATTCCAATTGTTGCTCTCACCGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTAGAAGTGGGCATGGATGCCTATTTAACAAAGCCAATTGACTTTAAATTGATGGAGTCTACCATTCTTTCACTCACAAGAAGGACATTCTGA 3654 0.4119 MGTNCRHFFDRLHSFATSWKKSNTPTGRRNLHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNVLNSTSEITTAQVKLSQYVIRSHTNLATLADQVEMYDAMRAVTWALFASRKALNSITVKYKNGFVQAFHRDLKDNNTFYIYSDLANYSIVADGYNEINSLSMHEAWNDKDIHDNKSAIWYREPLDPVSGEKIGKAMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSYNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSQEGYLLATSTNAPLLSNSTKPPKLKMAVDCENDVIREGAQWLQKTYGKNFPPSHEVHVENARLGHQEYYIDSFFLNMKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLVNNSIKFTLSGHIILRGWCENPNSCSDNAKFPLQQKKSRCSQKARVKQQENHAKRTSTRDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVRKEGPGTLMRLYLCLSAPVHATEQHCQVDFANKGLVVLLALHGNVGRSITSKWLQKNGVVTMEASEWNGLTQILRELFHSRSSARNDGFDAHYSVHDDLKSKLLSIQELKDPISVIAVDIGLLDLSTDIWKEQLNLLHKYSGRAKFVWILNHDSSNTIKMELRRKGHTLTVSKPLYKTKMIHILEAVMREKNDELQKKNMTTPRSTMKEGDLHESLEIDYTQCDVASSDGSDISEMSGSNLVIANGEKAVKSHLSSQYQINNLVELTNQYMEDNNPRKEGLCQSSLNSNDITADATLKSSSPKQASSATGSEYGETHRASSSGRATSRKKSLEGLRILLAEDTPVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMPNVEDCRKESLLKDRNTRSSETEILSGPPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTF* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0365 1217 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Apr3g0365 1217 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Apr3g0365 1217 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Apr3g0365 1217 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Apr3g0365 1217 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 745 IPR003594 -
Apr3g0365 1217 SMART HKATPase_4 596 748 IPR003594 -
Apr3g0365 1217 SMART REC_2 1066 1209 IPR001789 GO:0000160
Apr3g0365 1217 Pfam Response regulator receiver domain 1134 1206 IPR001789 GO:0000160
Apr3g0365 1217 Gene3D - 551 749 IPR036890 -
Apr3g0365 1217 CDD REC_hyHK_CKI1_RcsC-like 1068 1209 - -
Apr3g0365 1217 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Apr3g0365 1217 Gene3D - 471 550 - -
Apr3g0365 1217 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1214 - -
Apr3g0365 1217 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Apr3g0365 1217 SUPERFAMILY CheY-like 1064 1214 IPR011006 -
Apr3g0365 1217 ProSiteProfiles Response regulatory domain profile. 1067 1213 IPR001789 GO:0000160
Apr3g0365 1217 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Apr3g0365 1217 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Apr3g0365 1217 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1214 - -
Apr3g0365 1217 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 470 550 IPR036097 GO:0000155|GO:0007165
Apr3g0365 1217 Gene3D - 1044 1211 - -
Apr3g0365 1217 MobiDBLite consensus disorder prediction 1026 1058 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0365 Apr-Chr3 7264019 7271659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0365 6 1214 Histidine Kinase Gene Family AT2G17820 64.537 0.0 1553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr3g0365 HATPase_c 1.7e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0365 - - gmx:100801970 2129.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0365 3 7264019 7271659 Apr3g0365 3 7264019 7271659 ECH
Apr7g1114 7 18113790 18122443 Apr3g0365 3 7264019 7271659 PCT