Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0354 ATGGCTGAAGAGAGATTCACTGGCGTCGTGCAGTGGTTCAACAATGGCAAAGGCTTTGGCTTCATCAAACCCGACGATGGCGGCGAGGACCTCTTCGTTCACCAATCCTCAATCAGATCCGACGGCTACCGCACCCTGCTAGAAGGCGATCGCGTCGAGTTCTCTATCGCCACCGGCGATAACGACAAGACCAAAGCCGTCGACGTTACCGGCGTCGACGGCGCCCCTCTCCACTCCCGCAACGCCGCCGGAAATCGCTCCTCCGGCTACGGATTCGGCGCCAGGCGCAATGGCTCTGGCGGCGGAGCCGCCTGTTACCAGTGCGGTGATTTCGGCCATCTCGCTAGGGATTGCAACCGGAGCAACAATTCCGGCGGTGGGGGTGGCGGCGCATGTTTCAATTGCGGCGGGTTTGGCCACCTCGCGAGGGATTGCGTGCGCGGAAGCAATACCGGAGGCGGTAGCGCCGGCGGCGGAAGCGGATCTTGCTTTCGGTGTGGCGGATATGGACACATGGCGAGGGATTGCGCCACTGCGAAGGGTGGTAGCTCTGGTGGCGGCGGTGCTGGTGGCGGTTGCTTTCGTTGCGGAGAGGTTGGTCACTTGGCTAGGGATTGCAGCATTGATGGTGGGAGGTATGGTGGTGGTAACAGTGGCGGGGGTGCTAATGCTGGAAAAAGCACGTGCTTTAATTGTGGGAAGCCTGGGCATTTTGCGAGGGAGTGCGTTGAAGCCTCTGGGTGA 744 0.6089 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFSIATGDNDKTKAVDVTGVDGAPLHSRNAAGNRSSGYGFGARRNGSGGGAACYQCGDFGHLARDCNRSNNSGGGGGGACFNCGGFGHLARDCVRGSNTGGGSAGGGSGSCFRCGGYGHMARDCATAKGGSSGGGGAGGGCFRCGEVGHLARDCSIDGGRYGGGNSGGGANAGKSTCFNCGKPGHFARECVEASG* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0354 247 SUPERFAMILY Retrovirus zinc finger-like domains 96 147 IPR036875 GO:0003676|GO:0008270
Apr3g0354 247 ProSiteProfiles Zinc finger CCHC-type profile. 193 206 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 Gene3D - 189 212 - -
Apr3g0354 247 Gene3D - 220 247 - -
Apr3g0354 247 Gene3D - 157 185 - -
Apr3g0354 247 Gene3D - 128 155 - -
Apr3g0354 247 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Apr3g0354 247 SMART csp_8 7 72 IPR011129 GO:0003676
Apr3g0354 247 Pfam Zinc knuckle 131 145 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 Pfam Zinc knuckle 228 242 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 Pfam Zinc knuckle 104 118 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 Pfam Zinc knuckle 192 207 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 PANTHER COLD SHOCK DOMAIN PROTEIN 2 123 246 - -
Apr3g0354 247 PANTHER COLD SHOCK DOMAIN PROTEIN 2 96 124 - -
Apr3g0354 247 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 93 - -
Apr3g0354 247 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Apr3g0354 247 ProSiteProfiles Zinc finger CCHC-type profile. 132 145 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 PANTHER COLD SHOCK PROTEIN 2 123 246 - -
Apr3g0354 247 PANTHER COLD SHOCK PROTEIN 2 96 124 - -
Apr3g0354 247 PANTHER COLD SHOCK PROTEIN 2 1 93 - -
Apr3g0354 247 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Apr3g0354 247 SUPERFAMILY Retrovirus zinc finger-like domains 212 243 IPR036875 GO:0003676|GO:0008270
Apr3g0354 247 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 SUPERFAMILY Retrovirus zinc finger-like domains 158 208 IPR036875 GO:0003676|GO:0008270
Apr3g0354 247 Gene3D - 82 127 - -
Apr3g0354 247 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Apr3g0354 247 Gene3D - 1 81 IPR012340 -
Apr3g0354 247 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Apr3g0354 247 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Apr3g0354 247 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Apr3g0354 247 ProSiteProfiles Zinc finger CCHC-type profile. 105 118 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 SMART c2hcfinal6 228 244 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 SMART c2hcfinal6 104 120 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 ProSiteProfiles Zinc finger CCHC-type profile. 229 242 IPR001878 GO:0003676|GO:0008270
Apr3g0354 247 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0354 Apr-Chr3 7012639 7014351 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Apr3g0354 CSD 6.7e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0354 K09250 - gmx:106796585 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0354 3 7012639 7014351 Apr3g0354 3 7012639 7014351 ECH