Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0346 ATGGCAGAGCAAGTTCCATATGGTGTTGCTGCAAACTTCATTCACAAGTTGGCTTCTGCATCATTACACGAATTTGGACAGATTTATGGTGTCACAAATGAGTTAGAAGATCTTAAGAATACAATTGAATCCATCCATGCCGTGCTCCTTGATGCGGACGAGAAACAAGAACAAGATTATGCTGTACAAATCTGGATAAGAAGGCTCAAAGAAGTACTTCTTCATGCAGATGACTTGATAGATGACCTTATTGTTGAAAATATGAGACAGAAAGTGGAGGCATTTCATTCCTTTTCATCTTCTAACCGAATTTCTCTTCCAATTCAAATGGCTGATGAAATTAAGAGAACACAAGAAACTTTAAATGATGTATTACAAGAAATATCCAAGTTGAATTTAAGCCAAAGAGCTGTAGTATCCAAGCAATTTGATAGTGTAAGGAGAGAAACTAGTTCTTTTGTGTTAGAATCAGATATCATCGGCAGAGAAGATGGCAAAAAAAAGATTATAAGTCTATTAAAGCAACCAAATAAAAAACAGAATGTTTCTTGTATTGCTATTGTTGGCATTGGTGGTTTAGGCAAAACAGCTCTTGCTCAATTGGTATATAATGATGTGGAAGTGCAGAAGATTTTTGAAAAGCACATGTGGGTGTGCGTCTCTGATAACTTTGATATTAAGACTATTGTGAAGAAAATGTTAGAATCATTAACTGGTGTCCAAAGTGATGAAAAGTTATCATTAGATAACTTGCAAAGTAAGCTTCGCAAAAAATTGAGGGGTAAAAAATATTTGATAGTCTTGGATGACATTTGGAATGAGAATCATACAAAATGGGCTGATTTGAGAACTTACTTGATGTGTGGTACTCAAGATAGCAAAATTTTAGTGACAACTCGCAGTGAAGTTGTGGCCAGGAAAATGGGTGTAAGCGATCCCTATGTTTTGAATGGTTTAACAACAGAAGAATCTTGGTGCTTGTTAAAGAACATTGCATTTGAGGATGATACCATGGGAGTAAATCAAACTCTAGAGTTAATTGGCAAAAAGATTGCAGAAAAATGTGGAGGAGTTCCACTAGCTATTAAAACACTAGGAGGTCTATTACAAGGTAAAAGGGAAGAAGGTGAATGGATCAATGTTTTACACGGTGATTTTTGGAAATTATGCAAAGATGAAGATAGTATTATGCCAGTTCTAAAACTGAGTTACCAAAACCTGTCACCTCAACTGAGGCAATGCTTCTCTTATTGCTCTTTATATCCCAAAGATTGGGAAATTGAAAAGGATGAGTTGATTCAACTATGGATGGCACATGGTTTTCTTGAATGTTCAACTGAGAATGAGCATATGGAAGATATTGGTAACCAATTTGTAGAACTTTTCTTGATGAAGTCGTTTTTCCAAGATGCAAAAGTTAATAAGCAAGGTGAAATACTTAGTTTCAAAATGCATGATTTAATACATGATCTAGCAATGCTGGTAGCTGGCAATGATTGTTGTCACTTGGATAATAAGGGAAAAGGACTTGTAAGAAGACCCATGCACGTATCATTGGAACCTAATGCCATTTGTTTGTTAGACTCTTTGGATGCAAGTCGTTTGCGAACTTTAATTCTGCGGTCTTACAATGGGGAGGATTTGTCTGTTATTTCAAAATTCGAATACTTACGTGTCTTAACTTTGTCATCAAATTCAATCACTGAATTGCCTGATTCAATTGGAAATTTCGATCATTTGAGATATCTTAACTTGTCAAACTGCCGCTTGACAAGTCTTCCAAAATTCATTGGTAATCTCGTTTGCTTACAAACATTAATATTGAATTCTTGTGCAAAACTTGAATTTTATACAGCAGTTGTCACAAAATTAATTAATTTGAGACATCTTGACATTAGTAAATGTAGAGCCTTTGAACATGGGATGCCATTTGGATTAGGGAAATTGTCTATTGGAGGTTATCCAGGTTTGGCCTTTCCAAATTGGCTTTCTTCACTCCAAAATATTGTTGAAATCTCTCTTCGGGAGTGCAGTAATTGCCGTCATCTCTCACCATTGGAACATCTCTTGTGCCTTAAGTCACTAGAGATACGTTTCTTAGGAGAGTTGGAGTACATATATTTTACCGAAGATTTTTCAAAAACATTCTTCCCATCTTTGGAGTGCCTTCATCTTATAGATTGTCCAAAGTTCAAGGGATGGTGCAAGAAAGTAGATGATGCCAATGACACTAAGCAATCATTACATTATCATTCATTGCCTCCATTTCCTTGTCTTTCTCAATTAGAAATCAGAGCATGTCCACAGTTGATTTGGATGCCTACCTTCCCAAAGCTTGTTAAAGAATTGTTATTAGAAAGTTGTAGTTTGGAGCCATTGAAGGAAACACTAAATATGGCATCATCACTATGTTTGGTTGACTCTTTCACTCCTCTTTCCATGCTCAAATGCTTGCATATTTATGGAGATCTCAACATGACATCCATCCCAAATAATTGGATGCAGAATCTTACTTCTCTGGAGCAACTCATATTTGGATGGTCTCAAAGTAAAACATTTCAAGAATTTGAAATTTGGTTTAAGGATGACCTCAACTACCTTCCTTATCTACAAAAAATCAGTGTACAGTTTTGTAAAAACTTAGAAGCTTTGCCAGATTGGATGTGCAACCTCTCTTCACTTAAGCATATCACGATTTGGAGTTGCCCAAAATTGGTATCACTACCCGAAGGAATGCCTCGTCTTTCCAACTTACAAACCGTAGAAATCATTGGATGTCCCTTCTTACATCAAAATTTTAAAGGAGGAAGAAGTGCAACTTGGCCCAACATTGCTTGCATCCCAAAAATAATCTTGAAGTGA 2862 0.3609 MAEQVPYGVAANFIHKLASASLHEFGQIYGVTNELEDLKNTIESIHAVLLDADEKQEQDYAVQIWIRRLKEVLLHADDLIDDLIVENMRQKVEAFHSFSSSNRISLPIQMADEIKRTQETLNDVLQEISKLNLSQRAVVSKQFDSVRRETSSFVLESDIIGREDGKKKIISLLKQPNKKQNVSCIAIVGIGGLGKTALAQLVYNDVEVQKIFEKHMWVCVSDNFDIKTIVKKMLESLTGVQSDEKLSLDNLQSKLRKKLRGKKYLIVLDDIWNENHTKWADLRTYLMCGTQDSKILVTTRSEVVARKMGVSDPYVLNGLTTEESWCLLKNIAFEDDTMGVNQTLELIGKKIAEKCGGVPLAIKTLGGLLQGKREEGEWINVLHGDFWKLCKDEDSIMPVLKLSYQNLSPQLRQCFSYCSLYPKDWEIEKDELIQLWMAHGFLECSTENEHMEDIGNQFVELFLMKSFFQDAKVNKQGEILSFKMHDLIHDLAMLVAGNDCCHLDNKGKGLVRRPMHVSLEPNAICLLDSLDASRLRTLILRSYNGEDLSVISKFEYLRVLTLSSNSITELPDSIGNFDHLRYLNLSNCRLTSLPKFIGNLVCLQTLILNSCAKLEFYTAVVTKLINLRHLDISKCRAFEHGMPFGLGKLSIGGYPGLAFPNWLSSLQNIVEISLRECSNCRHLSPLEHLLCLKSLEIRFLGELEYIYFTEDFSKTFFPSLECLHLIDCPKFKGWCKKVDDANDTKQSLHYHSLPPFPCLSQLEIRACPQLIWMPTFPKLVKELLLESCSLEPLKETLNMASSLCLVDSFTPLSMLKCLHIYGDLNMTSIPNNWMQNLTSLEQLIFGWSQSKTFQEFEIWFKDDLNYLPYLQKISVQFCKNLEALPDWMCNLSSLKHITIWSCPKLVSLPEGMPRLSNLQTVEIIGCPFLHQNFKGGRSATWPNIACIPKIILK* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0346 953 Gene3D - 318 403 IPR042197 -
Apr3g0346 953 ProSiteProfiles Leucine-rich repeat profile. 579 600 IPR001611 GO:0005515
Apr3g0346 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 418 IPR027417 -
Apr3g0346 953 Coils Coil 114 134 - -
Apr3g0346 953 PANTHER OS05G0414200 PROTEIN 646 911 - -
Apr3g0346 953 PANTHER OS05G0414200 PROTEIN 33 646 - -
Apr3g0346 953 Pfam Rx N-terminal domain 12 98 IPR041118 -
Apr3g0346 953 SUPERFAMILY RNI-like 748 930 - -
Apr3g0346 953 SUPERFAMILY L domain-like 476 798 - -
Apr3g0346 953 Pfam NB-ARC domain 163 406 IPR002182 GO:0043531
Apr3g0346 953 Pfam Leucine rich repeat 557 611 IPR001611 GO:0005515
Apr3g0346 953 CDD RX-CC_like 16 124 IPR038005 -
Apr3g0346 953 Gene3D - 11 122 - -
Apr3g0346 953 Gene3D - 140 312 IPR027417 -
Apr3g0346 953 Coils Coil 35 55 - -
Apr3g0346 953 PANTHER DISEASE RESISTANCE PROTEIN RP 646 911 IPR044974 GO:0006952
Apr3g0346 953 PANTHER DISEASE RESISTANCE PROTEIN RP 33 646 IPR044974 GO:0006952
Apr3g0346 953 Gene3D - 404 493 IPR036388 -
Apr3g0346 953 Gene3D Ribonuclease Inhibitor 522 780 IPR032675 -
Apr3g0346 953 Gene3D Ribonuclease Inhibitor 781 935 IPR032675 -
Apr3g0346 953 ProSiteProfiles Leucine-rich repeat profile. 556 577 IPR001611 GO:0005515
Apr3g0346 953 PRINTS Disease resistance protein signature 184 199 - -
Apr3g0346 953 PRINTS Disease resistance protein signature 258 272 - -
Apr3g0346 953 PRINTS Disease resistance protein signature 355 369 - -
Apr3g0346 953 PRINTS Disease resistance protein signature 622 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0346 Apr-Chr3 6839194 6842352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0346 168 442 WRKY Transcription Factor Family AT5G45050 26.370 1.21e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0346 - - mtr:MTR_8g027540 1044.26