Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0330 ATGAGAACTCGAAATGCCGATTCCTCTTCCAAATCGGCAACCCCCAAAAAAACACCGCCAGCGAGGAAATCCGCCGCTAAAACCACCGCAGAATCCGCTGCGGTGAAGCGCACCCCTGCCACCAAAACCAGAAGCATCAAGAAGAAAGAGGCCTCGCCCGCACCCGGTTCCAATCTCGATCAATCTCCTTTGGAGCAAAAATCGTTAGCCAGTGCTAGCACTACAAAATCTATAAAGAAGAGGACTCCAGGGAGACCGAGAACTAAGGTAATTGATATTCCTGATTTGGAAGAACAATTAGAGGCAGTAGCTGATGAAACACCAATTGAAGATAATTTAGAGCCAGCAGGGAAAGTGGAAGAACCTAGAGATGTTGAAGTTGTGAATGCAGATGATGTTGAGGGTGAGAAAAAGGGGGAACAAGGTGTTGGGTCTGTTAAATTATATGATGAGAAGGAACAGAAGTCCTTGGAAGTGGATGAACCTGTTGTTGAAAACGTTTGCAAATCGGGGGATAAGGGGAAGGGCATAATGGATATTGAAGTAACTGCTTCTCAGGATGCTTCTATAACTTTTAAACGATCTGGGCGCACCATTGTTGACCTCAACATATCTGCAGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAGGAGGAGTTGACAAAAGAGGAGGGAAAGAAAGGAAATGAAGGGTTTAACAAACTGGAAGGAGAGAAAGGAAAGGAAGAGTTGAAAGATCAGGAAGGGGAGAAAGGAAAGGAAGATTTGAAAGATCAGGAAGGAGAGAAAGGAAAAGAAGAATTGATGGAACTAAAAGGAGAAAAAGGAAGGGAAGAGTATAAAGAACAGGAAGCAGAGAAAGGTAAGGAAGAGTTAAAAGAACAAGGACAGAAAGGAAAGGGAGAGTTGAAAGAACTAGAAAGAGACAAAGGAAAGCAAGAGTTGAAAGAGGAGGAACCAGATAAAGGAACAAGAGAGGAAACTTACCTTTTTGGACAGGAGGAGAACACTGAGTCTTTTGGTGTAGAAATGAAAGCCCAGATGCAAGATGAAGATGATTATCCCAAAAAGGATGGTGTTGATGGGCCAAAGAATGATGAGAAGTTAGATCTTGGAGAACAAGGGACGGAGGAGCTTGTTGAGGAAGATCCAGAGGAAGATCCTGAGGAACCTCAAGAAGAAACAGAGGCGGCATTGGAGGAGGAGCATAGGGAATTGGAGGCCATTGCAAAGCAGCGGAAGATTAGAAAAGAACACGAGATTTTTGTTGGTGGGCTGGATCGGGATGCTACAGAGGAAGATCTGAGGAAGGTTTTTCAGAGGATTGGGGAGATAGTTGAAGTCAGGTTACATAAAAATTCTTCAACAAACAAAAATAAGGGCTATGCTTTTGTGAAGTTTGCTAATAAGGAGCATGCAAAGAAAGCTCTGTCTGAAATGAAGAACCCTGTTATACATGGTAAACGGTGTGGAACTGCACCTAGTGAAGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACAAAAGAAGCTATTAAACAGAAGTTGATAGATTATGGTATTGAAGGGGTTGAAAGCATCACACTTGTCCCAGATGTTCAGCATGAAGGCATGAGCCGGGGCTTTGCATTCCTAGAGTTCTCTTGTCATGCTGATGCCATGCTTGCATACAAGAGGCTTCAAAAGCCCGATGTTATCTTTGGCCATGCTGAGCGAACAGCCAAAGTAGCCTTTGCTGAACCCATTCGAGAACCAGACCCTGAGATAATGGCGCAGGTGAAGTCTGTATTTATTAACGGTCTCCCCTTACACTGGGATGAAGATCTTGTGAGGGAGCTGTTCAAATCTTATGGTGAAATAATAAGAATTGTACTAGCACGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGGGATGGAGCATCAAAGATAAAAGTGAGAGCTAGGCTGTCAAATCCATTGCCTAAAACGCAGGCTGTTAAAGGTGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGAGTGGAGCCTTTCCAAGATCTGGAAGGGGTTTTGGGCGGGGAAGACAGCCCTTCAATAATTGGGGAAATTTCAACAGGGACAGGACTTTCTATCATGATGGACACAGTCAAATTGGAAGGATGGCTTTTCGGGACACCCGTGATTTTAGAGCTGTGAGGGGTGGACATTATGCAGGTAGCAGAGGTGCAGCTTTTGCTGGTCCATCCAGACCTTATAATGATAGAGCCTGGTATGGTATTCCTGATGGGGGCCCTAGTGAGCCTATTCCTCCAAGAGGGCCGTACTCTCCAGGTGGACAGTTTGACATGCCTTTCATGGGAAGGCATTTTGATGACCCATATCTATATGATGGCAATATGCATGCGATGAAACGCCCATTTTATATGACTGATCCTGAACCTGATTACATGGGGCCTAATAGACATCGTCCCCGATTGGATTATGCAGATCCACCTATATTTCATGGAACACATCATCATGATTCTTTTGGGTCCGGGAACAGACAGTACCCACCTGACTACTATGGTTCTGATTATGGTAGAGGCCCATATTCATCTTATTATGGGGGTGATGGCTCACATGGACATGGATACTATTATTAG 2706 0.4394 MRTRNADSSSKSATPKKTPPARKSAAKTTAESAAVKRTPATKTRSIKKKEASPAPGSNLDQSPLEQKSLASASTTKSIKKRTPGRPRTKVIDIPDLEEQLEAVADETPIEDNLEPAGKVEEPRDVEVVNADDVEGEKKGEQGVGSVKLYDEKEQKSLEVDEPVVENVCKSGDKGKGIMDIEVTASQDASITFKRSGRTIVDLNISADNEDCTGEKEGEEELTKEEGKKGNEGFNKLEGEKGKEELKDQEGEKGKEDLKDQEGEKGKEELMELKGEKGREEYKEQEAEKGKEELKEQGQKGKGELKELERDKGKQELKEEEPDKGTREETYLFGQEENTESFGVEMKAQMQDEDDYPKKDGVDGPKNDEKLDLGEQGTEELVEEDPEEDPEEPQEETEAALEEEHRELEAIAKQRKIRKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLIDYGIEGVESITLVPDVQHEGMSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDEDLVRELFKSYGEIIRIVLARNMSTAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFRIGHARSGAFPRSGRGFGRGRQPFNNWGNFNRDRTFYHDGHSQIGRMAFRDTRDFRAVRGGHYAGSRGAAFAGPSRPYNDRAWYGIPDGGPSEPIPPRGPYSPGGQFDMPFMGRHFDDPYLYDGNMHAMKRPFYMTDPEPDYMGPNRHRPRLDYADPPIFHGTHHHDSFGSGNRQYPPDYYGSDYGRGPYSSYYGGDGSHGHGYYY* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0330 901 CDD RRM_SF 502 565 - -
Apr3g0330 901 PANTHER NUCLEOLIN-LIKE ISOFORM X1 341 746 - -
Apr3g0330 901 PANTHER NUCLEOLIN-LIKE ISOFORM X1 804 894 - -
Apr3g0330 901 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 598 678 IPR000504 GO:0003723
Apr3g0330 901 MobiDBLite consensus disorder prediction 377 397 - -
Apr3g0330 901 CDD RRM_SF 422 490 - -
Apr3g0330 901 Gene3D - 587 741 IPR012677 -
Apr3g0330 901 MobiDBLite consensus disorder prediction 111 149 - -
Apr3g0330 901 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 570 IPR000504 GO:0003723
Apr3g0330 901 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 422 490 IPR000504 GO:0003723
Apr3g0330 901 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 600 666 IPR000504 GO:0003723
Apr3g0330 901 Coils Coil 290 310 - -
Apr3g0330 901 MobiDBLite consensus disorder prediction 207 403 - -
Apr3g0330 901 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 585 IPR000504 GO:0003723
Apr3g0330 901 MobiDBLite consensus disorder prediction 55 79 - -
Apr3g0330 901 Coils Coil 393 413 - -
Apr3g0330 901 MobiDBLite consensus disorder prediction 346 376 - -
Apr3g0330 901 SUPERFAMILY RNA-binding domain, RBD 421 667 IPR035979 GO:0003676
Apr3g0330 901 MobiDBLite consensus disorder prediction 208 333 - -
Apr3g0330 901 MobiDBLite consensus disorder prediction 1 149 - -
Apr3g0330 901 Gene3D - 365 494 IPR012677 -
Apr3g0330 901 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 420 498 IPR000504 GO:0003723
Apr3g0330 901 SUPERFAMILY RNA-binding domain, RBD 495 567 IPR035979 GO:0003676
Apr3g0330 901 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 341 746 - -
Apr3g0330 901 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 804 894 - -
Apr3g0330 901 Gene3D - 499 584 IPR012677 -
Apr3g0330 901 CDD RRM_SF 600 674 - -
Apr3g0330 901 SMART rrm1_1 421 494 IPR000504 GO:0003723
Apr3g0330 901 SMART rrm1_1 501 578 IPR000504 GO:0003723
Apr3g0330 901 SMART rrm1_1 599 674 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0330 Apr-Chr3 6610122 6617450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0330 422 666 Eukaryotic Initiation Factors Gene Family AT2G23350 23.810 9.74e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0330 - - gmx:100784338 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0330 3 6610122 6617450 Apr3g0330 3 6610122 6617450 ECH