Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0329 ATGATGGAGTCTTGTGTCCCACCGGGGTTTCGTTTCCACCCAACAGATGAAGAGCTAGTTGGTTATTATCTGAGGAAGAAAGTAACTTCTCAAAATATTGATCTTGATGTTATCAGAGAGATTGATCTATATCGTATTGAACCATGGGATCTACAAGAGAGATGCAGGATTGGGCATGAGGAGCAGAATGAATGGTATTTTTTCAGCCACAAAGATAAGAAATATCCAACGGGGACAAGAACAAACAGAGCTACCATGGCGGGCTTCTGGAAGGCCACAGGAAGAGACAAATCAGTGTACGAACGAACGAAACTCATTGGCATGAGGAAGACCCTTGTTTTCTATAAGGGAAGAGCCCCTAATGGGCAGAAAACTGATTGGATCATGCACGAGTATAGACTTGAAACTGTTGAGAATGGACCTCCACAGGAGGAAGGATGGGTCGTATGCAAAGCATTCAAGAAAAGAACAAATGGCCTAACGAAGACCATTGAAGGATGGGATCCAAGCTACTTATACGATGAACAAGCAAGTGGTGTCAACTCTTTGGTGGACCCAATTGAGCTTATCTTAAGGCAACCTCAAAATTTTTCAGCTCAAAATTTCTTGTACAAACAAGAGATAGAAGCAGATAATTTGAGCTTCATGCATGGAGACCAAGTGGTACAGCTTCCTCAGCTAGAAAGTCCTTCTTTTCCACTAATAAAGAAACAAAGCTCAATGTCCCTAGTATCAGATAATAACGAAGATGATTATCAATATGGATCATCCTCCAACACTATCAACAACAACAACACAAAGAAAGTGACTGATTGGAGAGCTCTTGACAAGTTTGTGGCTTCTCAGTTGAGTCAAGAGGTGAGGCATGAAACAGAAGGTGTGTCAAGCTTTGCAAACCATTATTCTAGCTCGGACATGGCATTGCTGCTCCTGCCTAATAATAATAATAAGAGTAGGGATAATGAAGAGAACAAGTTAAACCCATTTTTAAATACAAGCTCCGACTGTGACATTGGGATATGCGTATTTGAAAAATGA 1038 0.4094 MMESCVPPGFRFHPTDEELVGYYLRKKVTSQNIDLDVIREIDLYRIEPWDLQERCRIGHEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCKAFKKRTNGLTKTIEGWDPSYLYDEQASGVNSLVDPIELILRQPQNFSAQNFLYKQEIEADNLSFMHGDQVVQLPQLESPSFPLIKKQSSMSLVSDNNEDDYQYGSSSNTINNNNTKKVTDWRALDKFVASQLSQEVRHETEGVSSFANHYSSSDMALLLLPNNNNKSRDNEENKLNPFLNTSSDCDIGICVFEK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0329 345 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Apr3g0329 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 320 - -
Apr3g0329 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 320 - -
Apr3g0329 345 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Apr3g0329 345 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Apr3g0329 345 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0329 Apr-Chr3 6582797 6586125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0329 2 344 NAC Transcription Factor Family AT2G18060 60.705 4.59e-153 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr3g0329 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0329 - - aprc:113869508 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0329 3 6582797 6586125 Apr3g0329 3 6582797 6586125 ECH
Apr7g1084 7 17821125 17825382 Apr3g0329 3 6582797 6586125 PCT