Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0305 ATGGAGTTTTCCAGTTTCCATCTTCAGCATCAGCTTCAAGAAGAATCTGCTCAGTGTATAGCTTCAGCTACTCCGCCATCTCTCTATAAACCTTCTACCACCACTAGTCAATCATGGATCCCAAGCACCATATACAATGGTTCTACCAGTGGGTTTATAACGGGGAGCTTTAACAATTCAAGAGAACTAGGGCACAAGCACACCATGATTGATTCACTTAGAATTTCAACTGGGCAAGCCTATGGTTTTCACAATGGAAAAAGCTTCACTCAACGGCCAGCTAGTGATGATCTCTTTCCAGCAAAAATCAAAGGCGAAATGAACAGAAGCTCCTCGAAGTCTATGAATGAATCATGTTCATTAATCTCAACACATGAACCACAACATTCTCCTAGTTTCTTATCTAATATTTCTGTAACTGGTGAGGAGTTTTTTCCTGAGGAGGAGGAGCATCATGTTCACAAGCCTATAGATGGAATAGATGGAGGGATGGCCCTAACCAAGAGATATAACTTTGGAGATGTTTCCTCAAATTTACCAACCCTAGATATGTCCTCTTCGATAGTTTCATGTTCTTTGGGCTTAAATCATCAAGCGTTGGGTCTGCATACAAGTTATAATAATGGGAGTTATGGCCTCCAACCTTGCTATGATACTTTTGGTCTTAATGAGGCCATATCATTAAGCCACCGCAACATGCATGGTCTTGAAAGTAGTCCAACAAACAGCTCTCAGAAAATTTCATCATTCACAAGTGAAGTTGCAATGAAAAAGAGGTCTAGCTGTTGCTCTCTACCAAAAGAATATGAAGGAAAAGCTAAGAAGTCAAGGTCTTCATGCCCTTCCCTAAAGGTCAGAAAGGAAAGATTAGGAGATAGGATCCAAACTCTTCAGCGATTAGTGGCACCTTTCGGGAAGACCAGTACAGCCTCTGTTTTAAGTGAAGCTATTGGCTACATCCTTTTCCTTCGCCAACAAATCCAGAGGCTAGGGCTAGCTGAAGGCCTTGAAACTATAGAGAATGGGAAGACGCAGGAACGAATAAACGAATTGCGTTTGTATATATTTCTTCGATACTTATATGCTCTTTGTTCACTGCAGACTTTGAGCATTCCTTACATGAAATCCGCGCAAAACAAGCCCTCTAGAATGGTGCAGCTGGAATCAAACGAGGATGAAAGCAGAGAATTCAAGCCAGACCTTAGAAGCAGAGGGTTGTGTCTTGTGCCCCTTTCTTATGCATCATTTATTAATCGTTGTTCTTAG 1266 0.4147 MEFSSFHLQHQLQEESAQCIASATPPSLYKPSTTTSQSWIPSTIYNGSTSGFITGSFNNSRELGHKHTMIDSLRISTGQAYGFHNGKSFTQRPASDDLFPAKIKGEMNRSSSKSMNESCSLISTHEPQHSPSFLSNISVTGEEFFPEEEEHHVHKPIDGIDGGMALTKRYNFGDVSSNLPTLDMSSSIVSCSLGLNHQALGLHTSYNNGSYGLQPCYDTFGLNEAISLSHRNMHGLESSPTNSSQKISSFTSEVAMKKRSSCCSLPKEYEGKAKKSRSSCPSLKVRKERLGDRIQTLQRLVAPFGKTSTASVLSEAIGYILFLRQQIQRLGLAEGLETIENGKTQERINELRLYIFLRYLYALCSLQTLSIPYMKSAQNKPSRMVQLESNEDESREFKPDLRSRGLCLVPLSYASFINRCS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0305 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 330 IPR036638 GO:0046983
Apr3g0305 421 CDD bHLH_AtbHLH_like 284 330 IPR045239 -
Apr3g0305 421 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 367 417 - -
Apr3g0305 421 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 333 - -
Apr3g0305 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
Apr3g0305 421 Gene3D - 284 354 IPR036638 GO:0046983
Apr3g0305 421 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 333 - -
Apr3g0305 421 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 367 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0305 Apr-Chr3 5882667 5886197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0305 236 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 41.579 1.51e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0305 - - aprc:113859360 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0305 3 5882667 5886197 Apr3g0305 3 5882667 5886197 ECH