Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0289 ATGGGAACTGATTGCTGCGACGTAGTAGAGACATTACCAAATCCTCGGTCCTTTAAGGTACATCATACAATGTGCACAGAACTCAGGGAATTAGTTGATAGAATCTTGCGGATATTTCCACGCATAGAGGCAGCACGCCCTCCATCCTCATCAGGACAACAGGCTCTATGTTTGCTAATCAGTGCAATTGATAAAGCCAAACAACTCCTGCTACACTGCTCTGAATCTAGTAAACTCTACATGGCAATAACAGGGGAATCCATAGTCTCAAAATGCCAAAAGGCAAAACAATTGTTAGAGATAAGCTTAGTCCAGATTCAGAATATGGTTCCAGTTATGTTGGCTTCAGAGATTTCTCGGCTAATTGATGATATTGAGTGTGTGACATTTGTCCTGGACTCTGCTGAAGAAGAAGCTGGGAGGGTAGCGAGAGAGTTGCTCCAGCCAGGTCCTTCAACCTCTGATAAAGATTCAATGGACAATTCTGAAATTAAAGCTTTTCAGTTCGTAGCTGCAAGACTTGGTATTACATCCCCGAAGGCCATCTTAATAGAGAAAAGATCTATCAGGAAATTGCTAGAAAATGTCAAACCAAATAACCAGACCAAAAAGACTATCTTGAATAATCTTTTGTATCTTCTGATAAAGCACAGAAAATCAATCAAAGGAGAACAAATGGAGGTCTATTCTCATAGCCAAGGACCAATTGCAACTAAGAACTCTGGTCATGAGTCTCAAAGCATCCTTCATGTCAAATCAGACCCATACTTGAAGCATGGTCAGTATAGAACTGATGCCAGTGAGTTGGGTAGTGTTACACCTCCTAAGGAATATACATGTCCAATATCTTTAAGGTTGATGTATGACCCTGTTGCAATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTAATGAGGGTAATACTATATGCCCAAAAACTAAAAAGAAACTGGATCATTTGGCAATGACTCCAAATGTTGTCATTAAGACCTTAATATCAAAGTGGTGTGAAAGTAATGGAGTCTCCATTCCTGACCCAATTAGGCAATCACATGATTTGCGTTCATGGGAAACCTCCTCCACTTCGATTAGGAGTTTTGGAAGTTCTATGAATGATTTGAACTTGCAAATGGATTTTAGTAACGTGTCACTTGGATCATTAGATACCAGTTATAATTCAGATTCCTCACATGCTAAGGACAATCATGGCTTAGATTTGATGTTGAACAAGACCAGTGACAATTCTCACGGGCATCAATCTCAAGCACAGATACATGACTCGAACTTGACGTGTTTGTCTAAACTCCATGAACATCAATGGGATTCTCAATGCCAAATCATTGAAGATATAAAAAGAGATTTCAAATGCAATTACCAATCTTTGTCCTCCGTGTCATCTGAGAATTTCATTGATTCACTCATGAGATTTCTGAGCACTGCATGTGAAATGCATGACATAAAAGCTCTGAGAGCTGGAACTAAGTTGCTGATGGAATTTATGAAGGGCTGCAGAAATGGTATGACCAATTTAAGTGAAGATACATGCAGTATGTTGACAAGTCTTCTTGACACAGAAGTGATTGGAGAAGCTCTTACCATAATGGAAGAACTGTCTGGGAATTGGTATGAAAAGGCTAACATTGCAGCTTCCAGTGTACTCACTTCTGTTTCAAAGATCCTTGATTCTGGTAACGTAGAGTTCCAACAAAAAGCTATTAAAATAATGCATAATCTTTCATCCAATGGTGAAATTTGTCTCCACATGGTTTCTCTTGGGTGCATCCCAAAATTACTGCCATTTTTTGAAGACAGGACCCTTTTGAGAGACTGTATTTATATTTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTGCTGTTGCTGAAACGAAAGGATGCATATCTTCTGTTGTTGAAATACTTGGGACTGACAATGATGAGGAAAAAGAACCTGCACTGGCTGTTCTACTCTCGTTATGCTCTCAACGCGTGGAATACTGTGAGTTGGTTATGTATGAGGGGATTATCCCTTCTCTTGTCAACATCTCCAATAAAGGAAGTGATATCGCAAAGGCATATGCCCTTGAACTGCTCAGACTTTTGAGGGATTTAAACGACTTTGAGAATGAAGATTACTATGAGCCAAATCTCAATGCCTCTCAAGACTCTAACCGTCACTGTCAAAAAAAGAAATCATCACTTTTGAAGATACTATCACTCTTCTCAAAACCCAGTTCAATTGCATCAAAAAACAAGAGATGA 2277 0.3922 MGTDCCDVVETLPNPRSFKVHHTMCTELRELVDRILRIFPRIEAARPPSSSGQQALCLLISAIDKAKQLLLHCSESSKLYMAITGESIVSKCQKAKQLLEISLVQIQNMVPVMLASEISRLIDDIECVTFVLDSAEEEAGRVARELLQPGPSTSDKDSMDNSEIKAFQFVAARLGITSPKAILIEKRSIRKLLENVKPNNQTKKTILNNLLYLLIKHRKSIKGEQMEVYSHSQGPIATKNSGHESQSILHVKSDPYLKHGQYRTDASELGSVTPPKEYTCPISLRLMYDPVAIASGETYERMWIQKWFNEGNTICPKTKKKLDHLAMTPNVVIKTLISKWCESNGVSIPDPIRQSHDLRSWETSSTSIRSFGSSMNDLNLQMDFSNVSLGSLDTSYNSDSSHAKDNHGLDLMLNKTSDNSHGHQSQAQIHDSNLTCLSKLHEHQWDSQCQIIEDIKRDFKCNYQSLSSVSSENFIDSLMRFLSTACEMHDIKALRAGTKLLMEFMKGCRNGMTNLSEDTCSMLTSLLDTEVIGEALTIMEELSGNWYEKANIAASSVLTSVSKILDSGNVEFQQKAIKIMHNLSSNGEICLHMVSLGCIPKLLPFFEDRTLLRDCIYILKNLCDTEEGRVAVAETKGCISSVVEILGTDNDEEKEPALAVLLSLCSQRVEYCELVMYEGIIPSLVNISNKGSDIAKAYALELLRLLRDLNDFENEDYYEPNLNASQDSNRHCQKKKSSLLKILSLFSKPSSIASKNKR* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0289 758 SUPERFAMILY ARM repeat 437 710 IPR016024 -
Apr3g0289 758 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Apr3g0289 758 Coils Coil 695 715 - -
Apr3g0289 758 Gene3D - 609 718 IPR011989 -
Apr3g0289 758 CDD RING-Ubox_PUB 280 320 IPR045210 -
Apr3g0289 758 Gene3D - 405 608 IPR011989 -
Apr3g0289 758 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Apr3g0289 758 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 738 - -
Apr3g0289 758 SUPERFAMILY RING/U-box 262 351 - -
Apr3g0289 758 PANTHER U BOX DOMAIN-CONTAINING 2 738 - -
Apr3g0289 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Apr3g0289 758 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0289 Apr-Chr3 5674787 5680550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0289 15 716 U-box Gene Family AT4G36550 37.921 1.08e-140 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0289 - - gmx:100798951 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0289 3 5674787 5680550 Apr3g0289 3 5674787 5680550 ECH
Apr3g0289 3 5674787 5680550 Apr7g1029 7 17359084 17365263 ECH
Apr7g1029 7 17359084 17365263 Apr3g0289 3 5674787 5680550 PCT