Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0286 ATGGACATGAGAGAGCAAGATAATAAGGAAATAGAGATGCCTAGTACTTTGGGTTATAATCTCCCCAATAGAAATTCCTCTTCTTCCAAGCTAAGTTCTCCAACTCTAGCTTCAACAGTAGTAGGGGATCAAAGAGGTGATCATGATCAACCTCCTCAAAGTCGCACAATAATTTTCAGTGATCCATCCCAAAACTCACATCACCATCATCTTTATCCTTCTTCTCTTCCACCAAACCCACTTCAACTTCCACAAACAAACAGACCCAGAAGGGATCCAGATCCAAGTCCAATTTCTCCTCCTATAGTCACAACAAGCATAACAAACACCCCAAGAACAGCACCACCACCACAAACAACAGGAACTACCGCAGTTAGATACCGAGAATGTCTGAAGAATCATGCAGCAAGCATGGGGGGTCATGTCACAGATGGATGCGGAGAGTTCATGCCAAATGGAGAAGAGGGAACTGCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACAGAAATTTTCACAGAAAGGAAGCTGAAGGAGATTCACAACACGTTTTCAACTACCACACCTCTTATCCCAACAAGAACAACGCTCACAATAGGAACATTCATTCTCCTCAGTCTCATCTTCAGTTTCCTACACCTCACTCTTCTCTTCACCAACTTCATAGACTTTCTTCTTCACATGGGGTTGTGGGAGTGGCCACCCCTTCTGGGGGTTTGATTCAGCCCATGATGATAGGCTTTGGAGGAGGCCCAGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCAAATGATGGAGGCCAATTATTATCAGTGCAACCACCGCTATCATCAAAGAAGAGGTTCAGAACCAAGTTCACACAGCAACAAAAAGATAGGATGATGGAGTTCGCTGAGAAACTGGGGTGGAAGATCCAGAAACAAGATGAGGAGGAAGTGCATCAATTCTGCTCTCAAGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCTATGAAGAAGAAGCAAACGTAA 1038 0.4422 MDMREQDNKEIEMPSTLGYNLPNRNSSSSKLSSPTLASTVVGDQRGDHDQPPQSRTIIFSDPSQNSHHHHLYPSSLPPNPLQLPQTNRPRRDPDPSPISPPIVTTSITNTPRTAPPPQTTGTTAVRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTAESFKCAACECHRNFHRKEAEGDSQHVFNYHTSYPNKNNAHNRNIHSPQSHLQFPTPHSSLHQLHRLSSSHGVVGVATPSGGLIQPMMIGFGGGPAESSSEDLNMFQSNDGGQLLSVQPPLSSKKRFRTKFTQQQKDRMMEFAEKLGWKIQKQDEEEVHQFCSQVGVKRQVFKVWMHNSKQAMKKKQT* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0286 345 SUPERFAMILY Homeodomain-like 274 342 IPR009057 -
Apr3g0286 345 MobiDBLite consensus disorder prediction 1 121 - -
Apr3g0286 345 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 126 176 IPR006456 -
Apr3g0286 345 MobiDBLite consensus disorder prediction 18 40 - -
Apr3g0286 345 MobiDBLite consensus disorder prediction 51 72 - -
Apr3g0286 345 Pfam ZF-HD protein dimerisation region 125 177 IPR006456 -
Apr3g0286 345 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 127 176 IPR006456 -
Apr3g0286 345 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 281 338 IPR006455 -
Apr3g0286 345 MobiDBLite consensus disorder prediction 77 100 - -
Apr3g0286 345 MobiDBLite consensus disorder prediction 101 121 - -
Apr3g0286 345 Gene3D - 273 342 - -
Apr3g0286 345 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 67 343 - -
Apr3g0286 345 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 343 - -
Apr3g0286 345 ProSiteProfiles 'Homeobox' domain profile. 279 343 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0286 Apr-Chr3 5555767 5557253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0286 106 343 ZF-HD Transcription Factor Family AT2G18350 48.133 1.16e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr3g0286 ZF-HD_dimer 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0286 - - ccaj:109810490 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0286 3 5555767 5557253 Apr3g0286 3 5555767 5557253 ECH
Apr3g0286 3 5555767 5557253 Apr7g1026 7 17324079 17327332 ECH
Apr7g1026 7 17324079 17327332 Apr3g0286 3 5555767 5557253 PCT