Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0264 ATGCCGGTTGATTTGGACAATGCTTCCACAGCTTCGGGAGAAGCAAGCGTTTCTTCCTCTGGCAATCACACAGCACCACCAAAACCCACCATTAAGAAAAAACGAAACCTTCCAGGAATGCCAGATCCGGAAGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTTTAGCGACGAACCGGTTCGTGTGCGAGATATGCAACAAAGGGTTTCAAAGGGACCAGAATCTGCAACTTCATCGCAGGGGTCACAACTTGCCGTGGAAGCTGAGGCAAAGGTCGAGCAAGGAGGTGAAGAAGAGGGTGTACGTGTGTCCTGAACCAACGTGCGTTCACCACGATCCTTCTAGAGCCTTGGGAGACCTCACGGGGATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCCGTTCAATCCGATTGGAAGGCTCACTCCAAGGTTTGCGGGACCAGAGAGTATAAATGCGATTGTGGAACTGTTTTTTCCAGGAGGGACAGCTTCATCACGCATAGAGCTTTTTGCGATGCGTTGGCAGAGGAGAGTGCGAGATCTCATACCGTTGTGAAGGCTAATTCTGAGTCTGATTCTAAGGTTTTAACTGGCGATTCATCGCCGCCACCCCCACCGCCACCAGCGGCTGTGACTGCGTCGGAGGCGATTGCTACTAGTACTACTGCTGCCACCGCCATCACCGCCGTCACCTCCACTAACACTACTCAGTCAAATAGTGTCATGTCTTTGCAGACACAAAAGTTAGAGTTGCAAGAGAATCCCCCACAGGTCATAGAGGAACCGCCAGCTACTACTCCATTAAATGGGAGCTGTGTCAGCAACAGCACCACCGGCTCAACAAGCAATGGTGGTGCTATTACTAGCAGTAGTAGTGTGTTTGCAAGTTTGTTTGCTTCCTCAACAGCATCTGGGAATCTACATTCTCAAACTCCAGCATTCAGTGACCTCATTAGAGCCATGGGTCGTCCAGATCACCCTGCAGATATCTCAGTTCCTTCATCATCTGAGGCCATATCTCTCTGCCTATCCACCAACAATGGCTCATCATTTTTTGGAACAGGAGGGCAGGAGTGCCGCCAGTATGCCCCGCCGCCACAGCCAGCTTTGTCAGCCACCGCATTGCTGCAGAAAGCTGCTCAAATGGGATCTGCTGCCACAAACGCTTCTTTACTTCGTGGGTTTGGCATTGTGTCGTCATCTTCTGCTTCAGCCTCATCAGGCCAGCAAGATAGCTTGCAATGGGGTCAGCAGCTAGTGGAACCGGAGAGTGCCTCAGTTACTGCAGGACTTGGACTTGGCCTTCCATGTGATGGTGTTTCTGGACTAAAGGAATTGATGATGGGAACTCCTTCGATGTTTGGTCCTAAACATACCACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGCGGCACCGCTGGTGGAGGCTTATCTGCACTCATCACATCGATTGGTGGTGGTTTGGATGTTACTGCAGCAGCATCCTTTGGTAATGGAGAGTTCTCTGGAAAAGATATGGGAAGTAGCTCTTGA 1578 0.507 MPVDLDNASTASGEASVSSSGNHTAPPKPTIKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEESARSHTVVKANSESDSKVLTGDSSPPPPPPPAAVTASEAIATSTTAATAITAVTSTNTTQSNSVMSLQTQKLELQENPPQVIEEPPATTPLNGSCVSNSTTGSTSNGGAITSSSSVFASLFASSTASGNLHSQTPAFSDLIRAMGRPDHPADISVPSSSEAISLCLSTNNGSSFFGTGGQECRQYAPPPQPALSATALLQKAAQMGSAATNASLLRGFGIVSSSSASASSGQQDSLQWGQQLVEPESASVTAGLGLGLPCDGVSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTAGGGLSALITSIGGGLDVTAAASFGNGEFSGKDMGSSS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0264 525 Gene3D Classic Zinc Finger 41 107 - -
Apr3g0264 525 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Apr3g0264 525 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Apr3g0264 525 MobiDBLite consensus disorder prediction 195 227 - -
Apr3g0264 525 MobiDBLite consensus disorder prediction 274 298 - -
Apr3g0264 525 MobiDBLite consensus disorder prediction 1 43 - -
Apr3g0264 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Apr3g0264 525 Gene3D Classic Zinc Finger 115 195 - -
Apr3g0264 525 MobiDBLite consensus disorder prediction 9 26 - -
Apr3g0264 525 MobiDBLite consensus disorder prediction 281 298 - -
Apr3g0264 525 SMART c2h2final6 137 157 IPR013087 -
Apr3g0264 525 SMART c2h2final6 102 132 IPR013087 -
Apr3g0264 525 SMART c2h2final6 61 83 IPR013087 -
Apr3g0264 525 MobiDBLite consensus disorder prediction 196 212 - -
Apr3g0264 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 524 - -
Apr3g0264 525 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Apr3g0264 525 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0264 Apr-Chr3 5131388 5134994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0264 1 525 IDZ Gene Family AT5G66730 58.456 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g0264 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0264 K25869 - gmx:100806404 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0264 3 5131388 5134994 Apr3g0264 3 5131388 5134994 ECH
Apr3g0264 3 5131388 5134994 Apr7g1004 7 17076363 17080095 ECH
Apr7g1004 7 17076363 17080095 Apr3g0264 3 5131388 5134994 PCT