Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0259 ATGAATCATCTACCTATCGAAGACCATGTGATGCCCTTCTCTCAGCTATACCCTGATTCATTCGCTCAAATAACTCCTCAACAAGGGGAAAACAAGCCAAGACGCAGGCGAAATAAAAAGAATAAAGGTGGAGAAAACGGGGCTATGGACACCGTTAAGAAGAGAAAGCTCACCGTTGAACAAGTTAATCTTCTTGAGCAAAACTTTGGCAATGAACATAAACTTGAATCTCAAAGGAAGGACAGGCTCGCATTGGAACTTGGTTTGGACCCTCGACAAGTTGCGGTGTGGTTTCAAAACAGAAGATCTCGTTGGAAGAACAAAAAATTGGAGGAAGAATACACCAATCTTAAGAATCTTCATGAAGCCATCTTGCTCGAGAAATGCCACCTTGAGGCCGAGGTATTGAAGCTCGAGAAGCAACTTTTAGAGGCAAACAAGGAGATTCAGCGGCTACTAGAGCGTGCTGATAGAGCCCCAAGCAACAGCTCCAATTCCTCACAGTCACAGTCAATGGATGCTGTGAACCCACCATTTCTTGGAGAGTTTAGCGTGGAAGTATATGATGATGGTGATGTGTTTTACATTCCAGAGACCCATTACATCAATGGAATGGAGTGGATTAATCTGTACATGTGA 639 0.4351 MNHLPIEDHVMPFSQLYPDSFAQITPQQGENKPRRRRNKKNKGGENGAMDTVKKRKLTVEQVNLLEQNFGNEHKLESQRKDRLALELGLDPRQVAVWFQNRRSRWKNKKLEEEYTNLKNLHEAILLEKCHLEAEVLKLEKQLLEANKEIQRLLERADRAPSNSSNSSQSQSMDAVNPPFLGEFSVEVYDDGDVFYIPETHYINGMEWINLYM* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0259 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 211 - -
Apr3g0259 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 211 IPR045224 GO:0003700
Apr3g0259 212 Gene3D - 44 116 - -
Apr3g0259 212 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Apr3g0259 212 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Apr3g0259 212 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Apr3g0259 212 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Apr3g0259 212 CDD homeodomain 53 109 IPR001356 GO:0003677
Apr3g0259 212 SUPERFAMILY Homeodomain-like 52 115 IPR009057 -
Apr3g0259 212 SMART HOX_1 51 112 IPR001356 GO:0003677
Apr3g0259 212 MobiDBLite consensus disorder prediction 154 173 - -
Apr3g0259 212 Coils Coil 100 159 - -
Apr3g0259 212 Pfam Homeodomain 54 107 IPR001356 GO:0003677
Apr3g0259 212 MobiDBLite consensus disorder prediction 157 173 - -
Apr3g0259 212 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0259 Apr-Chr3 5059981 5061758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0259 1 212 Homeobox Transcription Factor Family AT4G36740 54.299 1.86e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Apr3g0259 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0259 K09338 - gmx:100810736 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0259 3 5059981 5061758 Apr3g0259 3 5059981 5061758 ECH
Apr7g0996 7 17007005 17008902 Apr3g0259 3 5059981 5061758 PCT