Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0241 ATGATTTTCTCATTTTTCACTCCAAATGTTAGTTCTGCCAAGCAATCCAAGATAGAAGGCTTGGAAATGAATGTGATAGATCAATGTTGGAGATTGAATGGTGAATGGAGGAGAAATCGATCACAACTTGCCACATGCTCGGTGGGTTATGCAGGGAAAATGACAAACAACATAGGTAAGGACCTCATACATTATGAAGTTACTGATTCTAGTGACAACCCAATAAACCCCAAACCTGGCACCTTGAGATATGGAGCTTCTAGAGTTCAAGGGAAAGTTTGGATCACATTCGAAAGAGACATGCACATTAGACTCGAGAAACCCCTTTTCATTAGCAGTTTCACCACCATTGATGGTCGAGGTGTCAATGTCCACATTGCTGATAATGCATGCTTGATGATCTTTAAGGCCACCAACATAATCATCCATGGCCTTAGGATTCATCATTGCCGACCTCAAGCTCCTGGACTGGTGATGGGTCCTAATGGAAAGGTAATGTCTTTGGGTCAAGTAGATGGAGATGCAATAAGATTGGTTACCGCTACCAAGATCTGGGTTGATCATAACACTCTTTATGATTGCCAAGACGGTCTTCTTGATGTCACACGAGGTTCCACTGATGTAACAGTCTCCAACAACTGGTTTAGGGAACAAAACAAGGTCATGCTTCTTGGCCATGATGATGGGTATTTGAGAGACAAGAACATGAAAGTCACCGTTGTGTACAACTATTTTGGACCCGATTGCCACCAACGCATGCCAAGAATTCGCCATGGGTATGCACATGTTGCCAACAATCTTTACATGGGATGGGTGCAATATGCCATAGGTGGAAGCATGGAACCCAGCCTCAAAAGTGAAGCCAACCTCTTCATAGCACCAACGTCTGGGAGTAAGGAGGTGACATGGAGAAAAAGCAGTAATGGAATTGGAGACACGTGGGAATTTCATTCAGTAGGGGACGCTTTTGAAAATGGAGCCTCATTCGTGGAAACAAAAGGTGAAAAGCTACGAACGCCAAATTATAGCCCTGAACAGAGATTTAAAGTTGCTGAAGCTACATCTGTGAGATCATTGACAAGCTCATCGGGTGTGTTACGATGCACTAATTAA 1113 0.4331 MIFSFFTPNVSSAKQSKIEGLEMNVIDQCWRLNGEWRRNRSQLATCSVGYAGKMTNNIGKDLIHYEVTDSSDNPINPKPGTLRYGASRVQGKVWITFERDMHIRLEKPLFISSFTTIDGRGVNVHIADNACLMIFKATNIIIHGLRIHHCRPQAPGLVMGPNGKVMSLGQVDGDAIRLVTATKIWVDHNTLYDCQDGLLDVTRGSTDVTVSNNWFREQNKVMLLGHDDGYLRDKNMKVTVVYNYFGPDCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRKSSNGIGDTWEFHSVGDAFENGASFVETKGEKLRTPNYSPEQRFKVAEATSVRSLTSSSGVLRCTN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0241 370 Gene3D - 23 367 IPR012334 -
Apr3g0241 370 PANTHER PECTATE LYASE 18-RELATED 4 369 IPR045032 GO:0030570
Apr3g0241 370 SUPERFAMILY Pectin lyase-like 45 333 IPR011050 -
Apr3g0241 370 Pfam Pectate lyase 111 291 IPR002022 -
Apr3g0241 370 PRINTS Pollen allergen Amb family signature 71 96 IPR018082 -
Apr3g0241 370 PRINTS Pollen allergen Amb family signature 108 124 IPR018082 -
Apr3g0241 370 PRINTS Pollen allergen Amb family signature 172 193 IPR018082 -
Apr3g0241 370 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Apr3g0241 370 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Apr3g0241 370 PRINTS Pollen allergen Amb family signature 314 338 IPR018082 -
Apr3g0241 370 PRINTS Pollen allergen Amb family signature 345 368 IPR018082 -
Apr3g0241 370 PANTHER PECTATE LYASE 4 369 - -
Apr3g0241 370 SMART amb_all 100 297 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0241 Apr-Chr3 4411933 4413839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0241 54 301 Polysaccharide Lyase AT5G09280 70.565 3.73e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0241 K01728 - gmx:100811216 659.062