Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0240 ATGGCTTTTTTCTTCCTTTCCTATCATACCCTATTTCTTGCACTTATGTTCTTTACCACAACCCATATCCTAGCTCAATTGCCACTAACAAATGGAACAAACTTTTCATGCCCCGTGAATTCAATTCCTTCTTGTGACACATACGTGGCATACTTTGCACAGTCTCCAAATTTTTTGACTCTAACAAGCATATCTGACATATTTGACACCAGCCCTCTATCCATTGCAAGAGCCAGTAACATGAAATCCGAATATGAAGATCTTATTCCAGGTCAACTCTTGTTAGTACCTGTAAATTGTAGTTGCAATGGAAACCTCTCATTCGCCACTATCTCACATGAGATCAGGCAAGGTGATAGCTACTATTCTCTTTCAACCACTTCATATGAGAATCTCACCACTTGGGAAAAAGTGAAAGATTTAAACCCTCATCTAGACCCATATCAGTTGCATGCAGGTATCAAAATAGTGATCCCTTTGTTCTGCAAGTGCTCTTCAAGATACCACTTGGATAAAGGGATAGAATATTTGATTACCTATGTTTGGCAGCAAAATGATAATGTTACCCTTGTAGCTGCCAAGTTTGGGGCATCCCCAGTGGACATAATAACTGAAAACAACATCAGCCAGAACTTCAATGTTGCAACCAACCTTCCAGTTTTTATCCCAGTGACACAGCTACCAGCTCTTTCTCAAATTTATTCACCACATGAAAGAAAGGGAAGCAATCATCTATCTATTGTGATCATTTCCATTGGTGTTAGCATTGTTTTGTTTACTCTTTTATTACTGGTTTATGTATATTGTTTGAGGAAAAAGAAGACTAGTAGTGAGAATAGGAGCGGGCCTTCTGTGGAGACTGCAGATAAGCTAATTTCTGGAGTTTCATGCTATGTAAGCAAACCAACCATGTATGAAGTTGGTGTGATTATGGAAGCTACCATGAACCTCAATGAACAATGCAGGATTGGGGAATCAATGTACATGGCCAAAATGGATGGTCAGGTTTTAGCAGTGAAAAAAGTGAAGGAAGATGTCACAAAAGAGGTGATGATTTTACAAAAGGTAAATCATGCAAATCTTGTTAAACTAACAGGAGTTTCTTTAGGTAATGACGGGAATTTCTTCCTTGTATATGAATATGCTGAAAATGGATCTCTTCATAACTGGTTGTTCTCCAAGTCTTCCAATGTTTCAAGCTCAATGGGCTTCCTCAATTGGAGTCAAAGGATAAGCATAGCAATTGATGTTGCCATGGGTCTTCAATACTTGCATGAACACATTCAACCATGTATAGTTCACATGGACATCACAACAAGTAACATCCTTCTTGACTCCAACTTTAAGGCCAAGATAGCAAATTTTTCCGCGGCAAGAACATCAACAAATCCTATGATAACAAAATTAGATGTCTTCGGTTATGGAATGGTTTTGTTGGAGTTACTGACAGGAAAAGAATCCTTAGCAAACAATGAAAATGGTGAATTGGCAATGGTGTGGAGTAAGGTTAAAGGGATCTTTGATCAAGAAGTGAAGAGAGAGGAAAGGTTTAGAAAATTGATGGATCCTATGTTAGGGGAGTTTTATTCTCTTGATGATGCTCTCAGCATCGCTTTCTGGGCAGTGAATTGCACAGCAGAGAAACCTTTGTCTAGACCAACAATGGGAGAAGTTGTTCTTAGCCTTTCCCTTCTCACTCAGCACTCTCCTTCCACATTGGAGAGATCATGGACTCATGGGTTAGAAGTAGAAGTTACTCGAACGCTGCTTACTCCAGTCACTGCTCGTTGA 1791 0.3931 MAFFFLSYHTLFLALMFFTTTHILAQLPLTNGTNFSCPVNSIPSCDTYVAYFAQSPNFLTLTSISDIFDTSPLSIARASNMKSEYEDLIPGQLLLVPVNCSCNGNLSFATISHEIRQGDSYYSLSTTSYENLTTWEKVKDLNPHLDPYQLHAGIKIVIPLFCKCSSRYHLDKGIEYLITYVWQQNDNVTLVAAKFGASPVDIITENNISQNFNVATNLPVFIPVTQLPALSQIYSPHERKGSNHLSIVIISIGVSIVLFTLLLLVYVYCLRKKKTSSENRSGPSVETADKLISGVSCYVSKPTMYEVGVIMEATMNLNEQCRIGESMYMAKMDGQVLAVKKVKEDVTKEVMILQKVNHANLVKLTGVSLGNDGNFFLVYEYAENGSLHNWLFSKSSNVSSSMGFLNWSQRISIAIDVAMGLQYLHEHIQPCIVHMDITTSNILLDSNFKAKIANFSAARTSTNPMITKLDVFGYGMVLLELLTGKESLANNENGELAMVWSKVKGIFDQEVKREERFRKLMDPMLGEFYSLDDALSIAFWAVNCTAEKPLSRPTMGEVVLSLSLLTQHSPSTLERSWTHGLEVEVTRTLLTPVTAR* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0240 596 ProSitePatterns Tyrosine protein kinases specific active-site signature. 432 444 IPR008266 GO:0004672|GO:0006468
Apr3g0240 596 Gene3D LysM domain 111 159 IPR036779 -
Apr3g0240 596 Pfam LysM domain 113 159 IPR018392 -
Apr3g0240 596 Pfam LysM domain 60 97 IPR018392 -
Apr3g0240 596 ProSiteProfiles Protein kinase domain profile. 285 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0240 596 Pfam Protein tyrosine and serine/threonine kinase 340 461 IPR001245 GO:0004672|GO:0006468
Apr3g0240 596 Gene3D Phosphorylase Kinase; domain 1 292 381 - -
Apr3g0240 596 SMART LysM_2 112 159 IPR018392 -
Apr3g0240 596 SMART LysM_2 179 223 IPR018392 -
Apr3g0240 596 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Apr3g0240 596 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 16 596 - -
Apr3g0240 596 PANTHER SERINE/THREONINE RECEPTOR-LIKE KINASE NFP 16 596 - -
Apr3g0240 596 Gene3D Transferase(Phosphotransferase) domain 1 382 463 - -
Apr3g0240 596 Gene3D Transferase(Phosphotransferase) domain 1 464 579 - -
Apr3g0240 596 SUPERFAMILY Protein kinase-like (PK-like) 327 563 IPR011009 -
Apr3g0240 596 CDD LysM 111 158 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0240 Apr-Chr3 4407534 4409324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0240 10 569 Receptor kinase-like Gene Family AT2G33580 29.630 1.29e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Apr3g0240 PK_Tyr_Ser-Thr 5.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0240 - - gmx:100301877 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0240 3 4407534 4409324 Apr3g0240 3 4407534 4409324 ECH