Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0238 ATGGGTTGGTTTACCAAATTGCTTAAGGGATCCAACCGTAAATCTTCAGGAGGAAAATATCATGGGAAATATGGAGATGACAGAATTTCAAACAATCATGATTACTCGGAGGAGAATTTGACAGATATTGAGAAAGAAGAAATTGATCGTGCAATAGCGCTCTCTCTTTCAGAGGCAGATCAGAAAGGGAAAAAAGTTATTGAGGATGACTCCGAATCTGAAGATGTTGAACTGTGTCAAATTGATGATGAGGAAGATGAATATCATGGTGAAATTCAACAAGATGATGATGACCATCTTGCTAAAATTCAACAGGATGAAGACAAACACCTTGATGAAGCTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCAACCTCAATCTGATGCTGATTCTTTATTTCAACCATTTGCACACTATTTCCCATCAGTATACAGAATCTGTGCTGGCTGCAATGCTGAGATTGGCCAAGGAAGATTTTTGAGTTGCATGGGAGGTTTCTGGCATCCAGAATGTTTTTGTTGCCATGCCTGCAAACTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGCTGCATCATCCGAAATGTGATGTTTGCAAGAATTTTATCCCACCAAATTCAGCTGGCCTCATTGAGTTTAGAGCACATCCTTTTTGGCTGCAAAAATATTGTCCATCGCATGAGCGGGACGGCACTCCTCGATGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGTCGAACGCTGTGTTTAGAGTGTCTTGACTCAGCTATCATGGATACTCACGAATGCCAACCTCTCTATGTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTAGAGCAGCAAATTCCTATGCTTTTGGTGGAGAGACAAGCACTGAATGAGGCGATGGAGGGGGAAAAGAATGGTCATCACCACTTACCCGAAACTAGAGGACTTTGCTTATCCGAAGAGCAAACTATCCCCACCATTTTAAGAAGACCAAGGATAGGGGCAGGATACCAGGTCATAGATATGATAACTGAGCCTTTTAGGCTGATTCGCCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTAACAGGATCAATCTTGGCTCATGAAATGATGCATGCATGGCTTAGGCTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCCCATATGTGGTTAGATTCAGAGATCTATTCTAGCTCTGGAAATGATGGTGCATCTTCATCTTCATCATCATCATCATCATCCTCGTCATCACCTTCTTCCTCTTCATCGTCAAAGAAAGGTAAACGTTCTGACTTTGAGAAGAAACTTGGAGAGTTTTTCAAACACCAGATTGAGTCAGATAGCTCAACAGCTTATGGAGATGGGTTCAGAGAGGGTAACCAGGCTGTGCTTAAATATGGGCTTAGAAGGACCCTTGACCATATCCGATTGACCGGAAGTTTTCCATTTTGA 1590 0.4151 MGWFTKLLKGSNRKSSGGKYHGKYGDDRISNNHDYSEENLTDIEKEEIDRAIALSLSEADQKGKKVIEDDSESEDVELCQIDDEEDEYHGEIQQDDDDHLAKIQQDEDKHLDEAQLEEDEQLARAIQESLSISSQPQSDADSLFQPFAHYFPSVYRICAGCNAEIGQGRFLSCMGGFWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPKCDVCKNFIPPNSAGLIEFRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRTLCLECLDSAIMDTHECQPLYVEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSSSGNDGASSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGEFFKHQIESDSSTAYGDGFREGNQAVLKYGLRRTLDHIRLTGSFPF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0238 529 MobiDBLite consensus disorder prediction 447 471 - -
Apr3g0238 529 SMART lim_4 157 209 IPR001781 -
Apr3g0238 529 MobiDBLite consensus disorder prediction 9 33 - -
Apr3g0238 529 SMART uim 117 136 IPR003903 -
Apr3g0238 529 SMART uim 43 62 IPR003903 -
Apr3g0238 529 Gene3D Cysteine Rich Protein 154 215 - -
Apr3g0238 529 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Apr3g0238 529 CDD LIM_DA1 158 210 - -
Apr3g0238 529 Pfam LIM domain 158 212 IPR001781 -
Apr3g0238 529 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 528 - -
Apr3g0238 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 239 - -
Apr3g0238 529 Pfam Protein DA1 307 524 IPR022087 -
Apr3g0238 529 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Apr3g0238 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 183 - -
Apr3g0238 529 MobiDBLite consensus disorder prediction 19 33 - -
Apr3g0238 529 Coils Coil 100 120 - -
Apr3g0238 529 PANTHER PROTEIN DA1-RELATED 2 1 528 IPR045218 -
Apr3g0238 529 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Apr3g0238 529 MobiDBLite consensus disorder prediction 447 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0238 Apr-Chr3 4389711 4396328 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr3g0238 DA1-like 2.6e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0238 - - gmx:100806605 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0238 3 4389711 4396328 Apr3g0238 3 4389711 4396328 ECH
Apr7g0970 7 16730657 16736401 Apr3g0238 3 4389711 4396328 PCT