Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0237 ATGGGAATAGCAACACCTTCATCGCTTCCTTCCATTCTCTCAAAGACACACCAACACCAACAGCAACACCATTTGAATTCTATGTCCCAAGATTACCACCACCACCACCACCAAGGAATCTTCAACTTCCCGAATGGGTTCGAGAGATCCACGACGGTAACACAAGAACAACAACAACAACAACAACAGATTCGGAGGGAGAAAGTCAGGGTGCAAGGGTTTGAGCCACAACAAACAACGTTAGTTCCGATAGAAGAAGAGGAATCAGGAAGCCTCCCAGTGTACGAAAACGAAGGCATGTTATCGGAGATGTTCAATTTCGGTGCCGGCGGCGCCGAATTATTGGAGCAGCAACCACAATCAATGACGACGACGTTTCGTTCCTCCACAAGGACAGTGGGCAGTGGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGTTAACTGGGTTGGGACCGTTGGGAGATTCAAAGAACCATCATCATCATCAGATGTCAAACATTAATGCTGACCCTGCAGCTGCCATGCAGCTTTTTCTCATGAACCCACAAACCAGATCCCCTTCACCCCCTCCTCCTTCTGCTTCTTCTTCCACTCTTCACATGTTGCTTCCCACTTTCCCTCCTGGTTCAACAACTGGAGGGTCTTTTGGTCAATTCTCATGGGTCCCTGACACTTCACAAGAAGGAGGCACAAGCACTGTTGTGGAAGGCCATGGCCAAGGTCTTTCCTTGTCCCTTTCTTCTTCTTTGGAAGCGGCAAAAGCTGAGGAATTGAGGATGGGGGATAGTGGGTTTTTGTATTTCAATCAAGCTAGTGGAGGAGGACCCTCTTCTTCTGCTCAATATCCTTATAAGAATCTCGCCGGTCATCACCACCAAGCATTGCATATACAACAAGGAGGGATTGGACAGAATCAGCAAGGACATGTTGGGTATGGAGCATCTTCATCAACACCATCCTTAGGTGTGGTTAACGTGTTGAGGAATTCCAAGTATGTCAAGGCTGCTCAAGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAGTAGGCAACTCTCAAACCCTAGTTCTAACCCCGGAGCTAGTGGTGGTGGCGGCGGCGGTTCTTATTCTTCATCAAAGGATGTTCCTCCTTTGTCAGCGGCTGATAGGATTGAACATCAAAGGAGGAAGGTCAAACTTCTAACCATGCTTGACGAGGTGGACCGAAGATACAGCCACTACTGCGAACAAATGCATATGGTGGTGAACTCATTTGACCTGGTGATGGGTTTTGGTGCAGCGGTTCCATACACAGCGCTAGCACAGAAAGCAATGTCTCGTCATTTTCGGTGTCTAAAGGATGCGATATCAGCGCAATTGAAGCATAGCTGTGACTTGCTGGGAGAGAAAGATGGGGCAGGGACCTCAGGATTGACCAAAGGAGAGACCCCAAGACTTAAGTTGCTTGAACAAAGCTTAAGACAGCAAAGAGCGTTCCACCAAATGGGTATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCCGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGTTTGTGGAAACCCATGGTGGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGTGCAGAAGAGAGAGAAAGGAACCAAAGCAGCAGCAACAGTGGCCACCAAGCAGCACAAACTCCAACGCCCTCAACAACAGCATCAACAGCAACAGCGCCACCACCAACAGCATCACCACCAACAACAATAGCAACAGCACCAACAGGCAAAAGATCCGATATCAATGCCCAAGATAGCGACCCTTCACTCGCAGCAATAAATAATAGACACCAAGCCAACTCCACCGCCACCACCGTTGCCGCCACCGCCTCTGAGGTGGTGCCACCCTCGGAGCTGCCCCCACACAACAACACCGACGAAACGTGTAGGCATGGTAGCTTGGTTACGACAACGGATTATGGGACCGCTTCTGCTACTTCTGACATTGGTTCAACTCTTATTAGGTTTGGGACCACCGCTGGTGACGTGTCACTCACCTTAGGGCTACGTCACGCTGGGAACATGCCCGAGAAAACCCCTTTCTCTGTTAGGGACTTTGGAGCCATTTAA 2253 0.4909 MGIATPSSLPSILSKTHQHQQQHHLNSMSQDYHHHHHQGIFNFPNGFERSTTVTQEQQQQQQQIRREKVRVQGFEPQQTTLVPIEEEESGSLPVYENEGMLSEMFNFGAGGAELLEQQPQSMTTTFRSSTRTVGSGGSEWYGNRQGMLTGLGPLGDSKNHHHHQMSNINADPAAAMQLFLMNPQTRSPSPPPPSASSSTLHMLLPTFPPGSTTGGSFGQFSWVPDTSQEGGTSTVVEGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYFNQASGGGPSSSAQYPYKNLAGHHHQALHIQQGGIGQNQQGHVGYGASSSTPSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQLSNPSSNPGASGGGGGGSYSSSKDVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCDLLGEKDGAGTSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEERERNQSSSNSGHQAAQTPTPSTTASTATAPPPTASPPTTIATAPTGKRSDINAQDSDPSLAAINNRHQANSTATTVAATASEVVPPSELPPHNNTDETCRHGSLVTTTDYGTASATSDIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSVRDFGAI* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0237 750 Gene3D - 516 578 - -
Apr3g0237 750 Coils Coil 576 596 - -
Apr3g0237 750 MobiDBLite consensus disorder prediction 630 648 - -
Apr3g0237 750 MobiDBLite consensus disorder prediction 44 70 - -
Apr3g0237 750 MobiDBLite consensus disorder prediction 122 139 - -
Apr3g0237 750 Pfam Homeobox KN domain 530 569 IPR008422 GO:0003677|GO:0006355
Apr3g0237 750 SMART HOX_1 513 577 IPR001356 GO:0003677
Apr3g0237 750 MobiDBLite consensus disorder prediction 1 70 - -
Apr3g0237 750 MobiDBLite consensus disorder prediction 122 142 - -
Apr3g0237 750 CDD homeodomain 513 574 IPR001356 GO:0003677
Apr3g0237 750 SUPERFAMILY Homeodomain-like 515 580 IPR009057 -
Apr3g0237 750 MobiDBLite consensus disorder prediction 598 620 - -
Apr3g0237 750 MobiDBLite consensus disorder prediction 356 392 - -
Apr3g0237 750 MobiDBLite consensus disorder prediction 585 648 - -
Apr3g0237 750 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 739 - -
Apr3g0237 750 SMART prehox3 322 461 IPR006563 -
Apr3g0237 750 MobiDBLite consensus disorder prediction 356 385 - -
Apr3g0237 750 Pfam Associated with HOX 327 460 IPR006563 -
Apr3g0237 750 ProSiteProfiles 'Homeobox' domain profile. 510 573 IPR001356 GO:0003677
Apr3g0237 750 MobiDBLite consensus disorder prediction 1 27 - -
Apr3g0237 750 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 81 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0237 Apr-Chr3 4302282 4310263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0237 1 560 Homeobox Transcription Factor Family AT4G36870 52.941 7.93e-152 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr3g0237 POX 4e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0237 - - gmx:100807143 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0237 3 4302282 4310263 Apr3g0237 3 4302282 4310263 ECH
Apr3g0237 3 4302282 4310263 Apr7g0969 7 16701003 16708720 ECH
Apr7g0969 7 16701003 16708720 Apr3g0237 3 4302282 4310263 PCT