Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0234 ATGGAAGTACTTCCTTGTTCTGGTGTTCAGTATGCTGGGGAATCTGATTGCCCTCAGCCAAGTTCAGGAACAGCTCTTGTATACCAGGGAGAACCTAATTGCCCTGAAAATTGTGATCAGGTTAAATTGGAAGATGATCAAATGAGTGACTCATTGCTTATGGACGGGCCTCAAATAGAAAGAAAAAGTCAAGGACAACAGACTGCTTGTGAACTCTTGAATACAGATTGCCAATGCCGTGAAGCTTCATATTGTGACTGTCAAGTGGAAGGCCAGAAGGATTCCTATAGTTTCCACAATGTTGAAGATGATGAAATAAAGGAACCTTGCTTAACCTTTGAGAACTCTCTCTCTATTCCAGATACAATTGAAAGTGAATCACCAGACAATAGCGAGGAGCGAGAATTGTCATTTTCTGAGCCCACTTGGTTAACAGGGGACGAGCCTTTGGCATTGTGGGTCAAGTGGAAAGGGAAGTGGCAGGCTGCTATCAAATGTGCAAGGGCTGACTGGCCATTATCAACTTTGAAAGCAAAACCAACTCACCACCAGAAGAAATATTTTGTCATATTTTTTCCCCACACAATGAATTATTCTTGGGCTGATATGCTACTTGTACGATCAATTAATGAGTTTCCCCAGGCCATTGCATATGAAACTCATCAGGCAGGATTGAAAATGGTAAAAGATTTGACTATTGCACGACGGTTTGTAATGCAAAAGCTAGCTATTGGAGTACTGACCATTGTTGATCAACTTCATCCTAGTGCCTTGATAGAAACTGCTCGTGATGTGATGGTTTGGAAGGAATTTGCTATGGAGATTTCTCATTGTAACAGTTATTCAGATTTTGGAAGAATGCTTCTAAAGCTACAAAATAGCATAGTGAAGCACTACACAAATGCTGACTGGATACAAAATGCATCTTACTTTTGGGCTGAACAATGCCAGAATGCAAACAGTGCTGAATCAGTAGAGCTACTTAAGGAGGAATTGTTTAATTCTATTTTGTGGAATGATGTCAACACTCTCTGGGAAACACTGGCGAAACCAACATTAGGTTCTGAGTGGAAAACCTGGAAGCATGATGTGATGAAATGGTTTTCCATATTACATTCCATTTCTAGCAGTACAGACATACAACAGGAGACCTCTGATGGTTTGTACCAAGTAAGCCTTCAGGTTGGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATCATACTTCCCTGATGGAAAACAAGGTTTCAGATTGCCCTATTACTCTTGAGACTGACCCAGGTTTCTGTAGGAATCAGGACATATTAAGTACTCCATTAGCATCTGAGACTTCTAAACAGGAAGATGTTAAGGAGGTACCTGTTGCAACTGATTTGTCTTGTGATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTGCCGATTCTAAGATCTTTCATATCAATGAAATGGAATCAACACCTATGAATGAAATGGTTGGTCAAAAATTTGTAGAACCTGATCCTAAGAATCGACAATGCATTGCTTATATCGAAGCCAAGGGAAGACAGTGTGTTAGGTGGGCAAATGATGGTGATGTATACTGTTGTGTGCATTTGTCAAGTCGTTTTATGGGAAGCTCAGGGAAATCTGAAAAACCTGTTTCAGTTGATACTCCAATGTGTGGAGGTACAACTGTTCTTGGTACTAAATGTAAACATCATGCCCTTCCTGGCTCGTCATTTTGTAAGAAACACCGTCCCCATGCTGAAACAGAGACCTCAAATTTAACCGAGAGTACTATGAAGAGGAAACATGAAGAAAATCATATTGGTTCAGAGGGCTTGATCAGAAAAGACTTGGCATTGATAAATGCTGCAAGTCCATTGCAAGTAGATCCAGTGTCAGCCAATGATGGTGATTCCTTCCTTGAAAGAAGTAACTCAGATGAGAAGCCCATCCTTTGTGGCAATGATCCAATTGCAATGGAGGCAATTCACTGTATAGGCTCTCCTCCATATGATAACAAGGACTCTTGTTCGGAAGCACCCAAGTGGTATTTCTTGTACTGTGAAAATCACCTTCCAAGCTGGCTTAAACGTGCAAGGAATGGGAAGAGTAGGATAATATCAAAAGAAGTATTCACAGAAATTTTAAGGGACTGCCGCTCATGGGAACAAAAGGTGCATCTGCATAAAGCATGCGAACTTTTTTACAGGCTATTCAAAAGCATTTTGTCACTAAGAAATCCAGTTTCCAAGGAAGTTCAGTTCCAATGGGCTCTGACCGAAGCCTCAAAAGATACTAGTGTTGGAGAATTCCTTACAAAGTTGGTTCATAGTGAAAAGGAGAGAATCAAATTGATTTGGGGATTCAATGATGAAATAGATATATCCTCAGCATTGGAAGGACCACCTCTTGTTCCTTCCCTAATTAAGGACAGCTTTGATAATGAAAATCCCATTAAGTGTAAGCTTTGCTGTGCAAAATTTCCTGACGACCGAACACTTGGTAACCATTGGATGGACAATCATAAAAAGGAAGCACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATTTGTCTAGATTCATTTACTAACAAGAAACTATTGGAAACCCATGTTCAGGAGAGACATCATGTGCAGTTTGTTGAGCAGTGCTTGCTTCTCCAATGTATTCCTTGTGGTAGTCATTTTGGAAATATGGAGCAGTTATGGCTGCACGTTTTATCAGTTCACCCTGCTGAATTTAAGCCATCAAAAGCTCCTGAGAAGCAAACTTCCCCTACTTGCAAGGATTCTCCAGAAAAACTTGAGCAGGGAAATTCAGCTTCTTTGGAAAATAATTCTGAGAATCCAGGTGGTTCACGGAAGTTTGTTTGCAGGTTTTGTGGGCTGAAATTTTATTTACTACCTGACCTAGGTCGCCATCATCAAGCTGCTCATATGGGACGTAATCCAGTTAGCGGCCCCTCTGGGAAGAGGGGAATTCGTCATTATACTCATAGATTAAAAGCTGGCAGACTTAGCCGTCCTAGATTTAAAAAAGGTTTATCAGCAGCTTCTATTAGGATCAGGAATAGGGCTAATGCTAATTTAAAGAGACGCATTCAGGCAACAAAGTCACTTGACATGGTGGAAACAACCATTCAATCAAATCTATCCGAGACAGCAAATATTGGTAAATTGGCAGGGTATCAATGCTCAGCAGTTGCAAAAATTTTGTTTCCTGAGATTCAGAAGACTAAACCTCGGCCTAACAATCTTGATATCTTGTCAATTGTTCGTTCTGCTTGCTGCAAAGTTAGTCTTAAAGCCTCGCTTGAGAAGAACTACGGAATTCTGCCTGAAAGGCTCTATTTGAAGGCAGCAAAACTTTGCAGCGAATATAACATTCTGGTAAATTGGCACCAGGAGGGGTTCATTTGTCCTAGAGGTTGTAAGGTTTTGAAAGACCAAAGGCAGCTCTCTCCATTAGTATCTCTTTCTAATGGTTTCCTAAAGCTAAAATCTGTAAATTTATCAGATCCTGCAAGTAATGAGTCGGAGGTGGATGAGTTTCACTACATCATCGATTCACACCATCTAAAAATAGGATCCTTACAAAAGGCTATAGTCTTGTGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGATATTCTAAATTCTCTTCCTAAGCATGGTCCCAATGAGCAAGATATAAATCTTTCTAGACCTTGGGAGAACTTTACCTATGTTACAAAACCAATGCTTGATCAAGCACCTAATCTTGATTCTGAGAGTCTGCAACTGAGATGTGCTTGCACATTTTCTGCGTGCTGTCCTGAAACCTGTGATCATGTCTACCTTTTTGATAATGACTATGATGATGCAAAAGACACGTATGGGAAATCAATGCGTGGCAGGTTCCCTTACGATGAGAATGGTCGAATAATATTGGAGGAAGGTTACCTTGTGTACGAGTGTAACCATATGTGCAGATGTAATAAAATCTGTCCAAACAGAATATTGCAGAATGGTATAAGGGTCAAATTGGAAGTATTTAAAACAGAGACGAAGGGATGGGCAGTAAGGGCTGGTGAGGCTATCCTTCGTGGCACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGATGAGAAGGAGGCACACAACAGGCTCAAAAGATACGGCACAGAACACTGCAGTTATTTCTATGATGTTAATGCTCATGTTAATGATATGGGTAGATTGATTGAAGGACAGGCCCGATATTTCATTGATGCTACTAGATTTGGAAATATCTCTAGGTTCATCAATAACAGCTGCTCACCCAATCTTATCAGTTACCAAGTTCTCGTAGAAAGCATGGATTGTGAACGTGCAAATATTGGGCTTTATGCAAATCGAGATATTGCTTTGGGTGAAGAATTGACATATAACTATCAATATGAGCTTGTGCCTGGTGAGGGATCACCTTGCCTTTGTGGCTCTGTAAAGTGCCGGGGACGCCTGTACTAG 4506 0.4063 MEVLPCSGVQYAGESDCPQPSSGTALVYQGEPNCPENCDQVKLEDDQMSDSLLMDGPQIERKSQGQQTACELLNTDCQCREASYCDCQVEGQKDSYSFHNVEDDEIKEPCLTFENSLSIPDTIESESPDNSEERELSFSEPTWLTGDEPLALWVKWKGKWQAAIKCARADWPLSTLKAKPTHHQKKYFVIFFPHTMNYSWADMLLVRSINEFPQAIAYETHQAGLKMVKDLTIARRFVMQKLAIGVLTIVDQLHPSALIETARDVMVWKEFAMEISHCNSYSDFGRMLLKLQNSIVKHYTNADWIQNASYFWAEQCQNANSAESVELLKEELFNSILWNDVNTLWETLAKPTLGSEWKTWKHDVMKWFSILHSISSSTDIQQETSDGLYQVSLQVGRKRPKLEVRRADHTSLMENKVSDCPITLETDPGFCRNQDILSTPLASETSKQEDVKEVPVATDLSCDLTNKWNEIVVEAADSKIFHINEMESTPMNEMVGQKFVEPDPKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFMGSSGKSEKPVSVDTPMCGGTTVLGTKCKHHALPGSSFCKKHRPHAETETSNLTESTMKRKHEENHIGSEGLIRKDLALINAASPLQVDPVSANDGDSFLERSNSDEKPILCGNDPIAMEAIHCIGSPPYDNKDSCSEAPKWYFLYCENHLPSWLKRARNGKSRIISKEVFTEILRDCRSWEQKVHLHKACELFYRLFKSILSLRNPVSKEVQFQWALTEASKDTSVGEFLTKLVHSEKERIKLIWGFNDEIDISSALEGPPLVPSLIKDSFDNENPIKCKLCCAKFPDDRTLGNHWMDNHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFVEQCLLLQCIPCGSHFGNMEQLWLHVLSVHPAEFKPSKAPEKQTSPTCKDSPEKLEQGNSASLENNSENPGGSRKFVCRFCGLKFYLLPDLGRHHQAAHMGRNPVSGPSGKRGIRHYTHRLKAGRLSRPRFKKGLSAASIRIRNRANANLKRRIQATKSLDMVETTIQSNLSETANIGKLAGYQCSAVAKILFPEIQKTKPRPNNLDILSIVRSACCKVSLKASLEKNYGILPERLYLKAAKLCSEYNILVNWHQEGFICPRGCKVLKDQRQLSPLVSLSNGFLKLKSVNLSDPASNESEVDEFHYIIDSHHLKIGSLQKAIVLCDDISFGKESIPVICVVDQDILNSLPKHGPNEQDINLSRPWENFTYVTKPMLDQAPNLDSESLQLRCACTFSACCPETCDHVYLFDNDYDDAKDTYGKSMRGRFPYDENGRIILEEGYLVYECNHMCRCNKICPNRILQNGIRVKLEVFKTETKGWAVRAGEAILRGTFVCEYIGEVLDEKEAHNRLKRYGTEHCSYFYDVNAHVNDMGRLIEGQARYFIDATRFGNISRFINNSCSPNLISYQVLVESMDCERANIGLYANRDIALGEELTYNYQYELVPGEGSPCLCGSVKCRGRLY* 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0234 1501 ProSiteProfiles SET domain profile. 1346 1478 IPR001214 GO:0005515
Apr3g0234 1501 ProSiteProfiles Pre-SET domain profile. 1267 1343 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr3g0234 1501 SMART c2h2final6 851 874 IPR013087 -
Apr3g0234 1501 SMART c2h2final6 885 908 IPR013087 -
Apr3g0234 1501 SMART c2h2final6 817 840 IPR013087 -
Apr3g0234 1501 SMART c2h2final6 954 977 IPR013087 -
Apr3g0234 1501 Pfam Zinc finger C2H2-type, 3 repeats 853 978 IPR040689 -
Apr3g0234 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 956 977 IPR013087 -
Apr3g0234 1501 SMART preset_2 1203 1330 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr3g0234 1501 MobiDBLite consensus disorder prediction 918 948 - -
Apr3g0234 1501 Pfam Pre-SET motif 1206 1338 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr3g0234 1501 ProSiteProfiles Zinc finger C2H2 type domain profile. 954 982 IPR013087 -
Apr3g0234 1501 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1501 - -
Apr3g0234 1501 MobiDBLite consensus disorder prediction 579 598 - -
Apr3g0234 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 887 908 IPR013087 -
Apr3g0234 1501 MobiDBLite consensus disorder prediction 578 598 - -
Apr3g0234 1501 ProSiteProfiles Zinc finger C2H2 type domain profile. 851 874 IPR013087 -
Apr3g0234 1501 ProSitePatterns Zinc finger C2H2 type domain signature. 819 840 IPR013087 -
Apr3g0234 1501 SMART PostSET_3 1485 1501 IPR003616 -
Apr3g0234 1501 Gene3D SET domain 1195 1501 IPR046341 -
Apr3g0234 1501 SMART set_7 1346 1484 IPR001214 GO:0005515
Apr3g0234 1501 SUPERFAMILY SET domain 1195 1491 IPR046341 -
Apr3g0234 1501 MobiDBLite consensus disorder prediction 913 948 - -
Apr3g0234 1501 Pfam SET domain 1357 1477 IPR001214 GO:0005515
Apr3g0234 1501 Gene3D Classic Zinc Finger 811 882 - -
Apr3g0234 1501 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1501 - -
Apr3g0234 1501 ProSiteProfiles Post-SET domain profile. 1485 1501 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0234 Apr-Chr3 4225792 4247418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0234 133 1500 C2H2 Transcription Factor Family AT2G23740 51.044 0.0 1333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr3g0234 Pre-SET 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0234 - - gmx:100808203 2510.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0234 3 4225792 4247418 Apr3g0234 3 4225792 4247418 ECH