Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0214 ATGGAGTCTGAACATGATCATCAACCGGCATCAGAAAATCCCACTGATCATGGGGAGGAGCAAGCAGGTGCAAGTCAAGTAACATCCAAGTCTTATGAGTGCAACTTTTGCAAGAGGGGTTTCTCTAATGCACAAGCTCTTGGGGGACACATGAACATCCATAGGAAAGATAAAGCCAAACTCAAGCAACAACAATTTCCAAACCAAACTCAAACATCTTTGGACAAGGTCCCTTCATTGGATCAAGCTAATTCTGTTGAAGATCGTAGCAAACCAAACTGGAATTTGAATGTGTCTCAACAAGAACATGGCTCCTCCAGAGCCACTCACACGAGGCAGCTTCCACTCTTTGCCGAATCACCAACTAATAGTGAAACACAAGAATCACAAGATGAAGAACGAACTTTGTTACCTAGCCAAGATTTCTCATCAGGGGTAGACCTTGAACTAAGACTGGGACCTGAACCACAAGAATCATCAAATGAAACGGGTACAAGAAAATTCTTTTGA 510 0.4275 MESEHDHQPASENPTDHGEEQAGASQVTSKSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQQFPNQTQTSLDKVPSLDQANSVEDRSKPNWNLNVSQQEHGSSRATHTRQLPLFAESPTNSETQESQDEERTLLPSQDFSSGVDLELRLGPEPQESSNETGTRKFF* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0214 169 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Apr3g0214 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Apr3g0214 169 Gene3D Classic Zinc Finger 16 92 - -
Apr3g0214 169 MobiDBLite consensus disorder prediction 63 125 - -
Apr3g0214 169 MobiDBLite consensus disorder prediction 48 169 - -
Apr3g0214 169 PANTHER OS07G0101800 PROTEIN 123 161 - -
Apr3g0214 169 PANTHER OS07G0101800 PROTEIN 1 131 - -
Apr3g0214 169 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
Apr3g0214 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 131 - -
Apr3g0214 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 123 161 - -
Apr3g0214 169 MobiDBLite consensus disorder prediction 1 29 - -
Apr3g0214 169 Pfam C2H2-type zinc finger 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0214 Apr-Chr3 3842575 3843084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0214 29 64 C2H2 Transcription Factor Family AT3G09290 77.778 1.19e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr3g0214 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0214 - - vun:114170729 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0214 3 3842575 3843084 Apr3g0214 3 3842575 3843084 ECH