Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr3g0214 | ATGGAGTCTGAACATGATCATCAACCGGCATCAGAAAATCCCACTGATCATGGGGAGGAGCAAGCAGGTGCAAGTCAAGTAACATCCAAGTCTTATGAGTGCAACTTTTGCAAGAGGGGTTTCTCTAATGCACAAGCTCTTGGGGGACACATGAACATCCATAGGAAAGATAAAGCCAAACTCAAGCAACAACAATTTCCAAACCAAACTCAAACATCTTTGGACAAGGTCCCTTCATTGGATCAAGCTAATTCTGTTGAAGATCGTAGCAAACCAAACTGGAATTTGAATGTGTCTCAACAAGAACATGGCTCCTCCAGAGCCACTCACACGAGGCAGCTTCCACTCTTTGCCGAATCACCAACTAATAGTGAAACACAAGAATCACAAGATGAAGAACGAACTTTGTTACCTAGCCAAGATTTCTCATCAGGGGTAGACCTTGAACTAAGACTGGGACCTGAACCACAAGAATCATCAAATGAAACGGGTACAAGAAAATTCTTTTGA | 510 | 0.4275 | MESEHDHQPASENPTDHGEEQAGASQVTSKSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQQFPNQTQTSLDKVPSLDQANSVEDRSKPNWNLNVSQQEHGSSRATHTRQLPLFAESPTNSETQESQDEERTLLPSQDFSSGVDLELRLGPEPQESSNETGTRKFF* | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr3g0214 | 169 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 34 | 54 | IPR013087 | - | |
Apr3g0214 | 169 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 32 | 59 | IPR013087 | - | |
Apr3g0214 | 169 | Gene3D | Classic Zinc Finger | 16 | 92 | - | - | |
Apr3g0214 | 169 | MobiDBLite | consensus disorder prediction | 63 | 125 | - | - | |
Apr3g0214 | 169 | MobiDBLite | consensus disorder prediction | 48 | 169 | - | - | |
Apr3g0214 | 169 | PANTHER | OS07G0101800 PROTEIN | 123 | 161 | - | - | |
Apr3g0214 | 169 | PANTHER | OS07G0101800 PROTEIN | 1 | 131 | - | - | |
Apr3g0214 | 169 | SUPERFAMILY | beta-beta-alpha zinc fingers | 29 | 59 | IPR036236 | - | |
Apr3g0214 | 169 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 131 | - | - | |
Apr3g0214 | 169 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 123 | 161 | - | - | |
Apr3g0214 | 169 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Apr3g0214 | 169 | Pfam | C2H2-type zinc finger | 32 | 56 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr3g0214 | Apr-Chr3 | 3842575 | 3843084 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr3g0214 | 29 | 64 | C2H2 Transcription Factor Family | AT3G09290 | 77.778 | 1.19e-16 | 71.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr3g0214 | zf-C2H2_6 | 1.4e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr3g0214 | - | - | vun:114170729 | 199.134 |