Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0205 ATGAATACGGACACGCAACCCGGAACGCCGTCGTATTGGTGCTACAGCTGCACCCGTTTCGTTCATCTCACCGGCCACGACAACATCCTGTGTCCCAACTGCGAAAGTGGCTTCGTCGAAGAGATCCGCGCCGACCCGTCACCGCGCCACCGTCTCAGCCCCTTTCCCGACGACGACCCTCTATCCCTCCGGAGGCAAGGCTTTCGCCGGAGACGCCGCGACGCCGGCAACCGCTCCCCTTTTAACCCTGTCATCGTTCTTCGTGGCCCCGGAGATGCCGCCGTCGATCGCGACGGAGCCAGCACGTTTGAGCTCTACTACGACGACGGCGACGGCTCCGGCCTCCGCCCCCTGCCGCCGACCATGTCCGAGTTCCTCCTCGGCTCCGGCTTCGACCGCTTGCTGGAGCAGTTCGCGCAGATCGAGATGAACGGCTTTGGCCGGCCGGAGAATCCCCCGGCGTCGAAGGCGGCGATTGAGTCGATGCCGACGGTCGAGATCGGAGAGGCGCAGGTGGGAACCGATGCGCACTGCGCCGTTTGCAAAGAGGCGTTTGAGCTACACGCGGAGGCGCGTGAGTTGCCGTGCAAGCATATCTATCACTCCGATTGCATTCTTCCATGGCTTTCGATGCGAAACTCGTGTCCTGTGTGTCGCCACGAGCTTCCCTCGGATCTGGAAAGCAGAGTTTCGGGGCAGATCGACGAGGAAGCGATCGGGTTAACTATTTGGAGGTTGCCCGGTGGGGGATTCGCTGTGGGTAGATTTTCCGGCGGCCGAAGAGCCGGCGAGAGCCATTTTCCGGTGGTGTACACGGAAATGGATGGTGGGCTGAACGCAAACGGAGCTCCGAGAAGAATTTCTCGGTCGGTGAGAAGCAATAGGGTTAGGGAAAGTCGTGGATTTGGCAGATTTTTTCGAAGTTTCTTTTCATTCTTTGGGAGACTTGGTTCAAGGTCCTCTTCTTCTTCTTCGTCTTTGTCATCTTATTCTAGCTCTGAGCACGTTTCAATGAGCAGAAGCCATAGCCAAGTGAGTTCAGTGTTCAATAGAAACTCACGGAGACGTAACAGGACTTGGGTCTTGGAAGATTGA 1095 0.579 MNTDTQPGTPSYWCYSCTRFVHLTGHDNILCPNCESGFVEEIRADPSPRHRLSPFPDDDPLSLRRQGFRRRRRDAGNRSPFNPVIVLRGPGDAAVDRDGASTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTVEIGEAQVGTDAHCAVCKEAFELHAEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDLESRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNANGAPRRISRSVRSNRVRESRGFGRFFRSFFSFFGRLGSRSSSSSSSLSSYSSSEHVSMSRSHSQVSSVFNRNSRRRNRTWVLED* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0205 364 SMART ring_2 178 218 IPR001841 -
Apr3g0205 364 Pfam Ring finger domain 177 219 IPR001841 -
Apr3g0205 364 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Apr3g0205 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 7 304 - -
Apr3g0205 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 304 - -
Apr3g0205 364 MobiDBLite consensus disorder prediction 45 65 - -
Apr3g0205 364 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Apr3g0205 364 CDD RING-H2_RNF126_like 178 219 - -
Apr3g0205 364 Pfam Protein of unknown function (DUF1117) 239 354 IPR010543 -
Apr3g0205 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 225 IPR013083 -
Apr3g0205 364 SUPERFAMILY RING/U-box 158 225 - -
Apr3g0205 364 MobiDBLite consensus disorder prediction 45 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0205 Apr-Chr3 3749553 3751297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0205 117 233 C3H Transcription Factor Family AT5G01980 44.444 2.20e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0205 - - gmx:100792874 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0205 3 3749553 3751297 Apr3g0205 3 3749553 3751297 ECH
Apr2g2313 2 28061724 28064419 Apr3g0205 3 3749553 3751297 ECH
Apr4g1911 4 27101678 27102901 Apr3g0205 3 3749553 3751297 ECH
Apr2g2313 2 28061724 28064419 Apr3g0205 3 3749553 3751297 PCT