Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0198 ATGGACGCAAACTTTCCCGAAGCTAGCGATATCTACCATTTTGGTGAAGACGGGAGCATTCTAGCTTCGGATCCAAGTCAATACCCAACGGACTGGTATGTCTCCGAATCACTTGCTTTTGCAACCACCGACCCTTCGTCCGTGGCAGGGACGGATCCTTCGTTGGAAGACAACGATTTTTCAGAAACTGCTAAGTTCATAGGCCAAATACTGATGGAAGAGAACGTTGAACAGAGACCCTTCTATGACTCTCTCAGCTTGCAAGTTACAGAGAAATCCTTCTACGATGCTCTCACTGATAACGCTTCTCTTTCCCCTAATCAACACCCTCTTGTTCTCAGCCCCGAAGGTGGAACCAGTAGCAGTAGCAGTAACAGTAACAGTAACAGTAACAATAGCGGTAACAACTTTTCGTATGAAAATTCTCATTTGTTGAAGCCTCCTTCTCCAGACTCCCCTGTTTCTATCCCTGTATTTCAGTTTAATTCTCATGTTGTTTCTCAATCGCCACCACCTTCCCTTAGTGTTAATGATGGACTTTTACATTTGGATTCTTCTATTACCAAACTCTTGGCACAAAATATTTTCAGTGATGTTGATTCTGTTTCCCAGTTTAAGAGAGGGTTGGAGGAAGCTAGCAAGTTTCTTCCGCCGGGGCCGAAGCTTGTGACGGGTCTAGAGCCTAAGGGAGGATCATCTGATGTAGTAGAGGATTCGATCGGGTTGAGAAGTAGGAAGAATCATGAGCGCGAAGAGAGTGATTTCAGACAAGAAGGGAGAAGTAGTAAGCACTCTGCGCTTAGCGTTGAGGATGAGAGCGATTTGTCTGATGCTTTTGATAGATTGTTCGTTAATGTGGGAAATGTGTGTACTGAAAACTATTATTTGCAGCGTGAAACAGTGAATGCTGAGCAGCGAGGTGAAAAGGGTGAAGGAGGGAAGGGTCGTCCTAAGAAACAAGGAGGGAAGAAGGAGACAGTGGATTTGAGGAATCTTCTGCTTATGTGTGCACAAGCTGTGTATGCCAATGATAACAGGACTGCTAATGAATTGTTGAACCAGATTAGGCGGCATGCTCTCCCCAATGGGGATGCATCACAGAGGTTAGCTTATTACTTTGCTAAAGGCCTTGAGGCGCGTTTGGTTGGTGATGGTACGGGTGCACAAGGAATGTTTTCCTCTCTTAGTTCCAAGAGGATCACTGTTGCTGAGCTTTTGAAAGCACACCAAACTTTTCTGTCTGCTTGCTCTTTCAAGAAGTTTACATATTTCTTTGCTAATAAGATGATTATGAAAACAGCCGCAAAGGAAGAAACCCTTCATATAATTGATTTTGGTATCCTCTATGGTTTCCAGTGGCCAATACTTATTAAGTTTTTGTCAGATAGAGAGGGTGGACCTCCTAAGCTGAGGATCACAGGGATAGAGTTCCCTCAACCTGGCTTTCGTCCCTCGGAGATGATTGAGGAGACTGGTCGCCGTCTTGCTAACTATTGCCAGCGTTACAATGTTCCCTTTCAGTACCATCCCTTGGCATCAAGGAACTGGGAAACCATTCAGGTTGAAGACCTTAAAATCGAGAGCAATGAGGTAGTTGCTGTGAACTGTCTGATGAGGTTTGAAAATTTACTGGATGAGACTATTGAAGTGAACAGTCCTAGAAATGCAGTCCTGCATTTGATCAGGAAGATAAATCCGGCTATTTTTACTCACTCCATTGTCAATGGATCTTATAATGCCCCTTTCTTTGCCACACGGTTTAGGGAGGCGCTGTTCCATTTCTCTACTATTTATGACATGTGTGACACTGTCATACCTCGTGGAAATGAAATGAGGATGATGATTGAGAGGGAGATTTTGGGCCGGGAGGCTATGAATGTTATAGCATGCGAAGGTTCTCAGAGGGTTGAGAGGCCTGAGACATACAAGCAGTGGCAAGTTAGAAATACGAGGGCTGGTTTCAAGCAGCTCCCACTGAATGAGGAATTAATGGCCAAATTTAGGACAAAGTTAAAGGAATGGTACCACAAAGATTTTGTCTTTGATCAAGATCAGAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCCACATGTTGGGTGCCAGCATAA 2121 0.4422 MDANFPEASDIYHFGEDGSILASDPSQYPTDWYVSESLAFATTDPSSVAGTDPSLEDNDFSETAKFIGQILMEENVEQRPFYDSLSLQVTEKSFYDALTDNASLSPNQHPLVLSPEGGTSSSSSNSNSNSNNSGNNFSYENSHLLKPPSPDSPVSIPVFQFNSHVVSQSPPPSLSVNDGLLHLDSSITKLLAQNIFSDVDSVSQFKRGLEEASKFLPPGPKLVTGLEPKGGSSDVVEDSIGLRSRKNHEREESDFRQEGRSSKHSALSVEDESDLSDAFDRLFVNVGNVCTENYYLQRETVNAEQRGEKGEGGKGRPKKQGGKKETVDLRNLLLMCAQAVYANDNRTANELLNQIRRHALPNGDASQRLAYYFAKGLEARLVGDGTGAQGMFSSLSSKRITVAELLKAHQTFLSACSFKKFTYFFANKMIMKTAAKEETLHIIDFGILYGFQWPILIKFLSDREGGPPKLRITGIEFPQPGFRPSEMIEETGRRLANYCQRYNVPFQYHPLASRNWETIQVEDLKIESNEVVAVNCLMRFENLLDETIEVNSPRNAVLHLIRKINPAIFTHSIVNGSYNAPFFATRFREALFHFSTIYDMCDTVIPRGNEMRMMIEREILGREAMNVIACEGSQRVERPETYKQWQVRNTRAGFKQLPLNEELMAKFRTKLKEWYHKDFVFDQDQNWMLQGWKGRILYASTCWVPA* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0198 706 MobiDBLite consensus disorder prediction 301 323 - -
Apr3g0198 706 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 705 IPR005202 -
Apr3g0198 706 MobiDBLite consensus disorder prediction 105 151 - -
Apr3g0198 706 ProSiteProfiles GRAS family profile. 320 704 IPR005202 -
Apr3g0198 706 MobiDBLite consensus disorder prediction 105 145 - -
Apr3g0198 706 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 49 705 - -
Apr3g0198 706 Pfam GRAS domain family 329 703 IPR005202 -
Apr3g0198 706 MobiDBLite consensus disorder prediction 220 269 - -
Apr3g0198 706 MobiDBLite consensus disorder prediction 302 323 - -
Apr3g0198 706 MobiDBLite consensus disorder prediction 239 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0198 Apr-Chr3 3682042 3685113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0198 65 706 GRAS Transcription Factor Family AT1G07530 47.688 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr3g0198 GRAS 3e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0198 - - gmx:100795855 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0198 3 3682042 3685113 Apr3g0198 3 3682042 3685113 ECH
Apr3g0198 3 3682042 3685113 Apr2g2307 2 28017393 28032861 PCT