Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0197 ATGTCTTATCAAAAAACAATGTTAATTATACGGTTCTTCTCTCTGTCTCTCTTTCAGACCACAATAATAGAAGACTTGATGGATCCTCATTTCAATAACGATGTTAAATTCAACCAACTTGCCAACTCCCTCGATGTAGAGGATCAGTGCCTTGACCCTGCAAATAGGATAATGAAAACCCTCGACTTTGGATTCATGGATAATCCGTTTCTTCTTCCACCTTATCCAAACGCAGTTCAAACTACTTCCGAGGAAGACTCTCCCTTGGATGAGACTGATTTTTCTGCCACAGTCTTACGCTACATAAACCAAATGCTTATGGAAGAGGACATGGAAGAGAAGCCATGTATGTTCCATGATTTCTTGGCTCTGCAAGCTGCTGAGAAATCACTCTATGATGTCATTGGTGAGACATACCCTTCTTCTTCTTCGTCCATCCAAAACTATCACAATGTGGAAACCCCTGATGGTAGTAACTTCAGTGGTTATAGTAGTAGTGGTACAACTAGCACTAGTAACTCGGTTGAGTCTCACTGGAGTAACATTGATCTTACTGACTATAAGCATTCTATGCTGCAAACCACTTTTCCTGCTGACTTTGTTTTCCAGGCCAGTTCACAACCGTCTATGAAAACCACTAGCACCTTCACTGTAACTGATGCTGGATTCTTGGCAAGCTCTGCTGCTGGATTTTTAGATTCAAGTTCATCATTGCTTAGCAAGAGTGAGTCTGTGCTGCAATTTGAGAGAGGCGTGGAGGAAGCCAGTAAGTTTCTGCCTAAAGGGAATCCATTGATTATTGACCTAGAGAATGGCTCCTTTATCCCTTCTTTTAGTAAGGTTCCTCAGCAATTGGAGGTTAAGATGGAGAGAGATGAAAGGGAGCATCTTTCTGCTGAGTCAAGAGGGAGGAAGAACCATGAGCGGGAAGATGAAGCAGATTTACAAGATGGGAGGAGCAACAAGCACTCTGCTGTTTACTCGGACGACAGTGAAATATCAGAATTGTTTGATAAGGTTCTGTTGGGAACGAGGTGTGGAAACGAGGCAGCTCCATTGTGTAATTTTAAGGAAGACCAACCTAATGGAGCAGATGCGAGTGTGCAGCAGAAAGAAGAAACAACCAAGTTTGGTGGTGGAAAGAGCCGTGTTAAGAAACAAGGCAATAAGAAGGGAGTTGTGGATCTCAGGACACTATTGATTCTATGTGCACAGTCTGTTTCTTCTGATGATCGTGTAACTGCTAATGAAATATTAAGGCAGATACAGCAACATTCTCATATGCTGGGTGATGGAACTCAGAGGCTGGCCAACTGCTTTGCAAATGCCCTTGAAGCACGATTGGCTGGCGCTGGAACTCAGATCTATACTGCTTTATCCTCCAAAAAAACGTCTGCTGCAGACATGGTGAAAGCTTACCAAATGTATATTTCAGCCTGTCCATTCAAGAAGCTTGCATTCATTTTTGCAAACCATACAATTTTGCATCTAGCCAAGGATGTAGAGACTCTTCATATTGTAGATTTTGGCATCCGTTATGGCTTCCAGTGGCCTGCTCTTATTTATCGTCTATCAAAACGACCTGGTGGCCCCCCCAAGCTGCGCATAACAGGGATAGAGCTTCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACAGGACTTCGCCTTGCAAGGTATTGTGATCGCTTTAATGTTCCATTCGAGTTCAATGATATTGCACAGAAATGGGAAACCATCAAAATTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATTGTATGTTTCGATTTCAGAATCTACCTGATGAGACAGTTGTGTTGAATAGTCCCAGGGATACTGTTTTGAAATTAATAAGGAAAGCAAATCCTGCTATCTTTATACATGCTACCGTCAATGGAAGCTATAATGCCCCATTCTTTGTGACACGGTTCCGGGAGGCTCTTTTCCATTATGCTACATTGTTTGATGTGCTTGATACCAATGTTGCTCACGATGATCCAATGAGGTTGATGTTTGAGAGAGAGTTCTTTGGGAGGCAGGTAATGAACATTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGAGGCCTGAAACATACAAGCAGTGGCAGGTTCGGAACATGAGAGCTGGATTTAGGCAACTACCCTTGGATCAACAACTCATTAACAAATTAAGATGCAAGTTGAAAGCTGTGTACCACAGTGATTTCATGCTTCTTGAAGATGCCAATTATATGCTGCAAGGTTGGAAGGGCCGAGTAGTTTATGCTTCCTCCTGTTGGGTACCTGCATAG 2310 0.4286 MSYQKTMLIIRFFSLSLFQTTIIEDLMDPHFNNDVKFNQLANSLDVEDQCLDPANRIMKTLDFGFMDNPFLLPPYPNAVQTTSEEDSPLDETDFSATVLRYINQMLMEEDMEEKPCMFHDFLALQAAEKSLYDVIGETYPSSSSSIQNYHNVETPDGSNFSGYSSSGTTSTSNSVESHWSNIDLTDYKHSMLQTTFPADFVFQASSQPSMKTTSTFTVTDAGFLASSAAGFLDSSSSLLSKSESVLQFERGVEEASKFLPKGNPLIIDLENGSFIPSFSKVPQQLEVKMERDEREHLSAESRGRKNHEREDEADLQDGRSNKHSAVYSDDSEISELFDKVLLGTRCGNEAAPLCNFKEDQPNGADASVQQKEETTKFGGGKSRVKKQGNKKGVVDLRTLLILCAQSVSSDDRVTANEILRQIQQHSHMLGDGTQRLANCFANALEARLAGAGTQIYTALSSKKTSAADMVKAYQMYISACPFKKLAFIFANHTILHLAKDVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRITGIELPQPGFRPAERVQETGLRLARYCDRFNVPFEFNDIAQKWETIKIEDLKIKENELLAVNCMFRFQNLPDETVVLNSPRDTVLKLIRKANPAIFIHATVNGSYNAPFFVTRFREALFHYATLFDVLDTNVAHDDPMRLMFEREFFGRQVMNIIACEGSERVERPETYKQWQVRNMRAGFRQLPLDQQLINKLRCKLKAVYHSDFMLLEDANYMLQGWKGRVVYASSCWVPA* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0197 769 MobiDBLite consensus disorder prediction 286 327 - -
Apr3g0197 769 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 75 768 IPR005202 -
Apr3g0197 769 PANTHER SCARECROW-LIKE PROTEIN 14 75 768 - -
Apr3g0197 769 Pfam GRAS domain family 396 766 IPR005202 -
Apr3g0197 769 ProSiteProfiles GRAS family profile. 387 767 IPR005202 -
Apr3g0197 769 MobiDBLite consensus disorder prediction 357 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0197 Apr-Chr3 3672662 3675583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0197 98 769 GRAS Transcription Factor Family AT1G07530 55.347 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr3g0197 GRAS 3.4e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0197 - - gmx:100815586 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0197 3 3672662 3675583 Apr3g0197 3 3672662 3675583 ECH
Apr2g2307 2 28017393 28032861 Apr3g0197 3 3672662 3675583 ECH
Apr2g2307 2 28017393 28032861 Apr3g0197 3 3672662 3675583 PCT